cmzmasek [Thu, 14 May 2015 18:02:12 +0000 (11:02 -0700)]
more tests for isDuplication() and isSpecation() added
cmzmasek [Thu, 14 May 2015 17:31:58 +0000 (10:31 -0700)]
Merge branch 'master' of https://github.com/cmzmasek/forester
cmzmasek [Thu, 14 May 2015 17:18:15 +0000 (10:18 -0700)]
Return null instead of throwing a NPE (issue: NPE in
NodeData.getSequence())
Change-Id: I19d7921cee63fcd1efa350787c2f2f54500ac291
Signed-off-by: cmzmasek <cmzmasek@yahoo.com>
cmzmasek [Thu, 14 May 2015 17:08:39 +0000 (10:08 -0700)]
Corrected misspelled method names (issue: "Typos in method names in
PhylogenyMethods")
Christian Zmasek [Thu, 14 May 2015 03:12:15 +0000 (20:12 -0700)]
Delete GSDI.wiki
Christian Zmasek [Thu, 14 May 2015 03:11:58 +0000 (20:11 -0700)]
Delete RIO.wiki
cmzmasek [Thu, 14 May 2015 02:46:52 +0000 (19:46 -0700)]
allow confidence values of 0.0 for domains
minor bug fixes
clean up
cmzmasek@gmail.com [Wed, 15 Apr 2015 02:00:22 +0000 (02:00 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 20:29:55 +0000 (20:29 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 20:17:20 +0000 (20:17 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:43:15 +0000 (01:43 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:26:51 +0000 (01:26 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:25:27 +0000 (01:25 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:23:33 +0000 (01:23 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:04:29 +0000 (01:04 +0000)]
in progress
cmzmasek@gmail.com [Fri, 3 Apr 2015 01:02:52 +0000 (01:02 +0000)]
in progress
cmzmasek@gmail.com [Thu, 2 Apr 2015 23:35:57 +0000 (23:35 +0000)]
in progress
cmzmasek@gmail.com [Thu, 2 Apr 2015 23:22:19 +0000 (23:22 +0000)]
in progress
cmzmasek@gmail.com [Wed, 1 Apr 2015 00:56:36 +0000 (00:56 +0000)]
in progress
cmzmasek@gmail.com [Wed, 1 Apr 2015 00:56:26 +0000 (00:56 +0000)]
in progress
cmzmasek@gmail.com [Tue, 31 Mar 2015 02:33:45 +0000 (02:33 +0000)]
in progress
cmzmasek@gmail.com [Tue, 31 Mar 2015 02:24:34 +0000 (02:24 +0000)]
in progress
cmzmasek@gmail.com [Sat, 28 Mar 2015 02:09:40 +0000 (02:09 +0000)]
in progress
cmzmasek@gmail.com [Sat, 21 Mar 2015 02:26:53 +0000 (02:26 +0000)]
in progress
cmzmasek@gmail.com [Thu, 12 Mar 2015 19:33:35 +0000 (19:33 +0000)]
in progress
cmzmasek@gmail.com [Thu, 12 Mar 2015 19:32:26 +0000 (19:32 +0000)]
in progress
cmzmasek@gmail.com [Thu, 12 Mar 2015 19:26:02 +0000 (19:26 +0000)]
in progress
cmzmasek@gmail.com [Thu, 12 Mar 2015 02:10:23 +0000 (02:10 +0000)]
in progress
cmzmasek@gmail.com [Thu, 12 Mar 2015 02:07:53 +0000 (02:07 +0000)]
Thank you, Oracle!
NOT
cmzmasek@gmail.com [Thu, 12 Mar 2015 02:07:20 +0000 (02:07 +0000)]
in progress
cmzmasek@gmail.com [Wed, 11 Mar 2015 02:27:09 +0000 (02:27 +0000)]
in progress
cmzmasek@gmail.com [Wed, 11 Mar 2015 02:24:33 +0000 (02:24 +0000)]
in progress
cmzmasek [Tue, 10 Mar 2015 05:56:18 +0000 (05:56 +0000)]
in progress
cmzmasek@gmail.com [Tue, 10 Mar 2015 01:42:04 +0000 (01:42 +0000)]
in progress
cmzmasek@gmail.com [Mon, 9 Mar 2015 23:01:42 +0000 (23:01 +0000)]
in progress
cmzmasek [Mon, 9 Mar 2015 22:22:30 +0000 (22:22 +0000)]
in progress
cmzmasek [Sun, 8 Mar 2015 01:59:48 +0000 (01:59 +0000)]
in progress, does NOT compile
cmzmasek@gmail.com [Sat, 7 Mar 2015 02:40:58 +0000 (02:40 +0000)]
in progress
cmzmasek@gmail.com [Sat, 7 Mar 2015 02:40:40 +0000 (02:40 +0000)]
in progress
cmzmasek@gmail.com [Sat, 7 Mar 2015 02:39:48 +0000 (02:39 +0000)]
in progress
cmzmasek@gmail.com [Sat, 7 Mar 2015 02:27:20 +0000 (02:27 +0000)]
in progress
cmzmasek@gmail.com [Sat, 7 Mar 2015 02:16:37 +0000 (02:16 +0000)]
in progress
cmzmasek@gmail.com [Thu, 5 Mar 2015 03:06:55 +0000 (03:06 +0000)]
in progress
cmzmasek@gmail.com [Thu, 5 Mar 2015 03:06:12 +0000 (03:06 +0000)]
in progress
cmzmasek@gmail.com [Thu, 5 Mar 2015 03:04:19 +0000 (03:04 +0000)]
Thank you, Oracle!
NOT
cmzmasek@gmail.com [Thu, 5 Mar 2015 03:00:13 +0000 (03:00 +0000)]
Applet is going more functions.
cmzmasek@gmail.com [Tue, 3 Mar 2015 20:13:55 +0000 (20:13 +0000)]
can now do antialias on Mac OS.
cmzmasek@gmail.com [Wed, 18 Feb 2015 18:00:33 +0000 (18:00 +0000)]
permissions = sandbox
cmzmasek@gmail.com [Wed, 18 Feb 2015 17:51:23 +0000 (17:51 +0000)]
permissions = sandbox
cmzmasek@gmail.com [Wed, 18 Feb 2015 17:50:02 +0000 (17:50 +0000)]
permissions = sandbox
cmzmasek@gmail.com [Wed, 18 Feb 2015 17:49:51 +0000 (17:49 +0000)]
permissions = sandbox
cmzmasek@gmail.com [Fri, 13 Feb 2015 01:09:37 +0000 (01:09 +0000)]
removed some uncheck warnings
cmzmasek@gmail.com [Fri, 13 Feb 2015 01:08:21 +0000 (01:08 +0000)]
java 1.8
cmzmasek@gmail.com [Fri, 13 Feb 2015 01:05:45 +0000 (01:05 +0000)]
removed some uncheck warnings
cmzmasek@gmail.com [Fri, 13 Feb 2015 01:00:15 +0000 (01:00 +0000)]
java 1.8
cmzmasek@gmail.com [Fri, 13 Feb 2015 00:36:37 +0000 (00:36 +0000)]
java 1.8
cmzmasek@gmail.com [Fri, 13 Feb 2015 00:32:40 +0000 (00:32 +0000)]
java 1.8
cmzmasek@gmail.com [Fri, 13 Feb 2015 00:30:23 +0000 (00:30 +0000)]
in progress
cmzmasek@gmail.com [Thu, 12 Feb 2015 23:54:21 +0000 (23:54 +0000)]
in progress
cmzmasek@gmail.com [Thu, 5 Feb 2015 04:19:47 +0000 (04:19 +0000)]
compactor work
cmzmasek@gmail.com [Fri, 30 Jan 2015 23:46:58 +0000 (23:46 +0000)]
can turn off ignore frag now
cmzmasek@gmail.com [Thu, 29 Jan 2015 03:46:33 +0000 (03:46 +0000)]
in progress
cmzmasek@gmail.com [Thu, 29 Jan 2015 01:25:18 +0000 (01:25 +0000)]
compactor work
cmzmasek@gmail.com [Wed, 28 Jan 2015 03:20:29 +0000 (03:20 +0000)]
compactor work
cmzmasek@gmail.com [Wed, 28 Jan 2015 03:15:33 +0000 (03:15 +0000)]
in progress
cmzmasek@gmail.com [Sat, 24 Jan 2015 04:19:28 +0000 (04:19 +0000)]
in progress
cmzmasek@gmail.com [Fri, 23 Jan 2015 01:11:51 +0000 (01:11 +0000)]
in progress
cmzmasek@gmail.com [Thu, 22 Jan 2015 04:37:07 +0000 (04:37 +0000)]
compactor work
cmzmasek@gmail.com [Thu, 22 Jan 2015 04:34:20 +0000 (04:34 +0000)]
compactor work
cmzmasek@gmail.com [Fri, 16 Jan 2015 23:05:08 +0000 (23:05 +0000)]
in progress
cmzmasek@gmail.com [Fri, 16 Jan 2015 23:02:52 +0000 (23:02 +0000)]
in progress
cmzmasek@gmail.com [Wed, 14 Jan 2015 01:42:34 +0000 (01:42 +0000)]
in progress
cmzmasek@gmail.com [Wed, 14 Jan 2015 01:40:46 +0000 (01:40 +0000)]
in progress
cmzmasek@gmail.com [Tue, 13 Jan 2015 18:51:15 +0000 (18:51 +0000)]
in progress
cmzmasek@gmail.com [Thu, 8 Jan 2015 01:29:07 +0000 (01:29 +0000)]
in progress
cmzmasek@gmail.com [Thu, 8 Jan 2015 01:27:09 +0000 (01:27 +0000)]
in progress
cmzmasek@gmail.com [Thu, 8 Jan 2015 00:02:09 +0000 (00:02 +0000)]
typo
cmzmasek@gmail.com [Wed, 24 Dec 2014 23:59:55 +0000 (23:59 +0000)]
Changed list to set in search0 and 1.
cmzmasek@gmail.com [Wed, 24 Dec 2014 23:57:58 +0000 (23:57 +0000)]
Changed list to set in search0 and 1.
cmzmasek@gmail.com [Wed, 24 Dec 2014 03:07:25 +0000 (03:07 +0000)]
typed search is being added
cmzmasek@gmail.com [Wed, 24 Dec 2014 03:06:36 +0000 (03:06 +0000)]
typed search is being added
cmzmasek@gmail.com [Wed, 24 Dec 2014 03:05:46 +0000 (03:05 +0000)]
typed search is being added
cmzmasek@gmail.com [Wed, 24 Dec 2014 00:55:41 +0000 (00:55 +0000)]
typed search is being added
cmzmasek@gmail.com [Tue, 23 Dec 2014 21:56:27 +0000 (21:56 +0000)]
typed search is being added
cmzmasek@gmail.com [Sat, 20 Dec 2014 04:47:21 +0000 (04:47 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Sat, 20 Dec 2014 04:46:37 +0000 (04:46 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Sat, 20 Dec 2014 04:41:49 +0000 (04:41 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Wed, 17 Dec 2014 01:46:25 +0000 (01:46 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Tue, 16 Dec 2014 22:04:20 +0000 (22:04 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Tue, 16 Dec 2014 01:12:55 +0000 (01:12 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Tue, 16 Dec 2014 00:36:58 +0000 (00:36 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Tue, 16 Dec 2014 00:36:39 +0000 (00:36 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Mon, 15 Dec 2014 23:19:02 +0000 (23:19 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Sat, 13 Dec 2014 03:14:31 +0000 (03:14 +0000)]
domain + go output work begins
cmzmasek@gmail.com [Tue, 18 Nov 2014 23:18:01 +0000 (23:18 +0000)]
in progress
cmzmasek@gmail.com [Tue, 18 Nov 2014 23:15:24 +0000 (23:15 +0000)]
clean up + move to java1.8
cmzmasek@gmail.com [Tue, 18 Nov 2014 22:58:27 +0000 (22:58 +0000)]
cmzmasek@gmail.com [Tue, 18 Nov 2014 22:58:16 +0000 (22:58 +0000)]
cmzmasek@gmail.com [Tue, 18 Nov 2014 22:49:47 +0000 (22:49 +0000)]
cmzmasek [Thu, 23 Oct 2014 18:30:58 +0000 (18:30 +0000)]
bugfix
git://source.jalview.org / jalview.git / log