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2019-01-25	gmungoc	JAL-3187 return a colour for linked features with transparency	commit \| commitdiff \| tree
2019-01-25	gmungoc	JAL-3187 set initial state of checkbox from viewport	commit \| commitdiff \| tree
2019-01-25	gmungoc	JAL-3187 don't compute variant features on peptide...	commit \| commitdiff \| tree
2019-01-23	gmungoc	JAL-3187 fix out by one feature on structure position	commit \| commitdiff \| tree
2019-01-23	gmungoc	Merge branch 'develop' into feature/JAL-3187linkedFeatures	commit \| commitdiff \| tree
2019-01-23	gmungoc	JAL-3063 correct handling of absent choice element...	commit \| commitdiff \| tree
2019-01-22	gmungoc	JAL-3187 clunky sort by renderorder in findComplementFeature...	commit \| commitdiff \| tree
2019-01-21	gmungoc	JAL-3187 also repaint complement on change in FeatureTypeSet...	commit \| commitdiff \| tree
2019-01-21	gmungoc	JAL-3187 draw complement features on alignment / structure	commit \| commitdiff \| tree
2019-01-21	gmungoc	JAL-3187 unit tests updated and errors caught	commit \| commitdiff \| tree
2019-01-21	gmungoc	JAL-3187 findFeaturesAtResidue answer in render order...	commit \| commitdiff \| tree
2019-01-21	gmungoc	JAL-3187 repaint a 'following' complementary view on...	commit \| commitdiff \| tree
2019-01-21	gmungoc	JAL-3187 (hacked up) show complement features on structure...	commit \| commitdiff \| tree
2019-01-18	gmungoc	JAL-3187 basic first version for tooltips only (rendering...	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3186 remove Variable Colour from popup menu	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3186 remove duplicate message keys	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-2069 wider dialog so all fields show!	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-2069 clear any error colour when setting threshold...	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3125 tidy up	commit \| commitdiff \| tree
2019-01-14	gmungoc	JAL-3125 avoid slider 'rounding' threshold field value	commit \| commitdiff \| tree
2019-01-03	gmungoc	JAL-1889 additional test for clover-added fields	commit \| commitdiff \| tree
2019-01-03	gmungoc	JAL-1889 ignore 'synthetic' fields added for jacoco	commit \| commitdiff \| tree
2018-12-21	gmungoc	JAL-1767 minimise local variable scope	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-2791 JAL-2808 correct Javadoc for api method	commit \| commitdiff \| tree
2018-12-19	gmungoc	JAL-3032 ignore /site also on non-JS branches	commit \| commitdiff \| tree
2018-12-06	gmungoc	JAL-1854 fix Checkstyle import violations	commit \| commitdiff \| tree
2018-12-06	gmungoc	JAL-1854 Checkstyle updated to 8.12	commit \| commitdiff \| tree
2018-11-08	gmungoc	JAL-1889 ignore Clover instrumentation in test (second...	commit \| commitdiff \| tree
2018-11-08	gmungoc	JAL-1889 unit test tweaks for running on server	commit \| commitdiff \| tree
2018-09-28	gmungoc	JAL-3063 service param files read/saved using JAXB...	commit \| commitdiff \| tree
2018-09-28	gmungoc	JAL-3063 top level element added to JalviewWsParamSet.xsd	commit \| commitdiff \| tree
2018-09-28	gmungoc	JAL-3063 comments re use of xjc to generate Java binding...	commit \| commitdiff \| tree
2018-09-24	gmungoc	JAL-3063 tidy commented out code	commit \| commitdiff \| tree
2018-09-21	gmungoc	JAL-3063 wrappers with check for null getting optional...	commit \| commitdiff \| tree
2018-09-20	gmungoc	JAL-2843 tweaks to help text for filters	commit \| commitdiff \| tree
2018-09-20	gmungoc	JAL-2843 help text for colour by attribute, feature...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3120 preserve plain colour value when changing...	commit \| commitdiff \| tree
2018-09-19	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-2808 JAL-3032 drop tabbed layout for Colours and...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3063 use JAXB for 'Save as Project' and load project...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3063 unit test for save/load project switched to...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 Save/Load user defined colours using JAXB	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 Save/Load user colour scheme using JAXB	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 top level element added to colours schema...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 New View via JAXB	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 temporary extra menu option to save/load project...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 first version of Jalview2XML using JAXB to...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 JAXB binding classes generated by xjc from...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 tweak schema so JAXB tool xjc recognises XML...	commit \| commitdiff \| tree
2018-09-18	gmungoc	JAL-3063 tweak schema so JAXB generates enums for enumerated...	commit \| commitdiff \| tree
2018-09-17	gmungoc	JAL-3116 test method renamed to match code	commit \| commitdiff \| tree
2018-09-17	gmungoc	JAL-3116 unit tests adapted to EMBL over JAXB	commit \| commitdiff \| tree
2018-09-14	gmungoc	JAL-3116 parse EMBL XML with JAXB (todo: update unit...	commit \| commitdiff \| tree
2018-09-13	gmungoc	JAL-3116 Uniprot XML unmarshalled using JAXB not Castor	commit \| commitdiff \| tree
2018-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-12	gmungoc	JAL-1551 reinstated Save actions	commit \| commitdiff \| tree
2018-09-03	gmungoc	Merge branch 'trialMerge' into releases/Release_2_10_5_Branch	commit \| commitdiff \| tree
2018-09-03	gmungoc	JAL-3076 fetch Ensembl sequence as JSON instead of...	commit \| commitdiff \| tree
2018-08-31	gmungoc	JAL-3003 remove redundant call to drawSelectionGroup	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3059 use correct border colour for groups	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3003 draw selection group outline on main graphics...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3087 include full alignment height in repeating...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	commit \| commitdiff \| tree
2018-08-15	gmungoc	JAL-3080 remove tree partition if no groups created	commit \| commitdiff \| tree
2018-08-14	gmungoc	JAL-3078 reset Tree font (only!) on Cancel	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3018 updated to Ensembl REST 7.0	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3076 refactor for more efficient scan of 'gene...	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3076 fetch Ensembl sequence as JSON instead of...	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2755 correct Javadoc and error handling	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2920 format/comment tidy	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2920 wrap description in <html/> if it includes...	commit \| commitdiff \| tree
2018-06-07	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' of https...	commit \| commitdiff \| tree
2018-06-06	gmungoc	JAL-2920 unit tests for 3 or more original or variant...	commit \| commitdiff \| tree
2018-06-06	gmungoc	JAL-3013 ensure Chimera as a symlink gets resolved	commit \| commitdiff \| tree
2018-06-04	gmungoc	JAL-2808 update test for revised treatment of 'mixed...	commit \| commitdiff \| tree
2018-06-04	gmungoc	JAL-3019 correctly form toRange of 'traversed' MapList	commit \| commitdiff \| tree
2018-06-04	gmungoc	JAL-3018 updated REST versions to 6.3	commit \| commitdiff \| tree
2018-05-31	gmungoc	JAL-2808 don't capture or report min-max for mixed...	commit \| commitdiff \| tree
2018-05-31	gmungoc	JAL-2808 pre-fill numeric inequality filter with min...	commit \| commitdiff \| tree
2018-05-28	gmungoc	Merge branch 'bug/JAL-797' into develop	commit \| commitdiff \| tree
2018-05-28	gmungoc	Merge remote-tracking branch 'origin/releases/Release_2_10_4...	commit \| commitdiff \| tree
2018-05-25	gmungoc	JAL-2992 simpler heuristic for available height	commit \| commitdiff \| tree
2018-05-25	gmungoc	JAL-2995 tooltip on fields with double-click to browse...	commit \| commitdiff \| tree
2018-05-25	gmungoc	JAL-2994 temporary patch with paths to Chimera for...	commit \| commitdiff \| tree
2018-05-24	gmungoc	JAL-2997 additional tests	commit \| commitdiff \| tree
2018-05-23	gmungoc	JAL-2993 AlignFrame listen for keystrokes in OverviewPanel	commit \| commitdiff \| tree
2018-05-23	gmungoc	JAL-2997 unit test	commit \| commitdiff \| tree
2018-05-23	gmungoc	JAL-2997 handle tab-delimited trailing column number...	commit \| commitdiff \| tree
2018-05-21	gmungoc	JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW	commit \| commitdiff \| tree
2018-05-21	gmungoc	JAL-2920 use HGVS notation for protein variant feature	commit \| commitdiff \| tree
2018-05-11	gmungoc	JAL-2986 corrected findIndex for out of range residue...	commit \| commitdiff \| tree
2018-05-11	gmungoc	JAL-2986 additional asserts for SequenceCursor updates	commit \| commitdiff \| tree
2018-05-11	gmungoc	JAL-2986 failing test added	commit \| commitdiff \| tree
2018-05-09	gmungoc	JAL-2984 add pdb as sequence(s) if associate structure...	commit \| commitdiff \| tree
2018-05-07	gmungoc	JAL-2808 ensure test setUp/tearDown alwaysRun	commit \| commitdiff \| tree
2018-05-07	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' into...	commit \| commitdiff \| tree
2018-05-07	gmungoc	JAL-1767 unit test for save and restore PCA	commit \| commitdiff \| tree
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