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JAL-1189 JAL-3130 patch broken tests
2019-04-16
Jim Procter
JAL-1189 JAL-3130 patch broken tests
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2019-04-14
Jim Procter
JAL-3130 write clover.xml during cloverReport phase
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2019-04-14
Jim Procter
JAL-3130 make sure testng-results.xml is generated
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2019-04-12
Jim Procter
JAL-3130 specify module list when launching new Jalview...
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2019-04-12
Jim Procter
JAL-3130 instrument main and compile separately to...
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2019-04-12
Jim Procter
JAL-3130 gradle test now runs open clover 4.3.1 and...
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2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_investigat...
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2019-04-11
Jim Procter
JAL-3130 ensure J11 libs/modules are added when building...
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2019-04-11
Jim Procter
JAL-3130 clean up eclipse class path for dependencies...
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2019-03-29
Jim Procter
JAL-3111 Disable the pubapplet target in build.xml...
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2019-03-28
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2019-03-28
Jim Procter
JAL-3111 biojava dependencies
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2019-03-28
Jim Procter
JAL-3111 fix libquagua dependency paths - needs to...
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2019-03-28
Jim Procter
JAL-3111 fix jabaws dependency name in IA config
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2019-03-28
Jim Procter
JAL-3111 intervalstore library on IA classpath
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2019-03-28
Jim Procter
JAL-3111 typo in IA config
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2019-03-28
Jim Procter
JAL-3111 update InstallAnywhere dependencies for changed...
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2019-03-07
Jim Procter
JAL-3127 set ‘updateStructures’ flag for viewports...
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2019-02-28
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
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2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into feature...
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2019-01-18
Jim Procter
Merge branch 'develop' into feature/JAL-3063jaxbNoCastor
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2019-01-17
Jim Procter
JAL-3116 clear out whitespace when materialising Sequence...
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2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
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2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL...
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2019-01-15
Jim Procter
JAL-1767 test that changing view association for PCA...
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2019-01-15
Jim Procter
JAL-1767 refactor associated view logic to public method...
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2019-01-15
Jim Procter
JAL-1767 patch buggy PCA view association test
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2019-01-09
Jim Procter
JAL-1767 failing test to check if the PCA view association...
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2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into features/pca_jaxb_d...
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2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2019-01-09
Jim Procter
JAL-3063 remove stale JAXB binding POJO
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2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into features/pca_jaxb_d...
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2019-01-09
Jim Procter
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2019-01-09
Jim Procter
JAL-3063 - ant task for regenerating JAXB schema -...
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2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
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2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
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2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
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2018-12-18
Jim Procter
JAL-2846 ahem - proper release note for this fix from...
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2018-12-18
Jim Procter
JAL-3178 known defect in release notes
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2018-12-17
Jim Procter
JAL-3111 JAL-2846 release notes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2846' into develop
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2018-12-17
Jim Procter
JAL-3111 tweaked release notes and documented JAL-2864
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
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2018-12-17
Jim Procter
JAL-2865 release notes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
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2018-12-17
Jim Procter
Merge branch 'task/JAL-3174_fixed_filename_tests' into...
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2018-12-17
Jim Procter
JAL-3174 backout un-needed stacktrace for exception...
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2541cutRelocateFeatures' into...
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2018-12-17
Jim Procter
JAL-2541 JAL-2822 release notes
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2018-12-17
Jim Procter
JAL-3111 bump release 2.11 release to January 2019
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2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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2018-12-14
Jim Procter
JAL-3171 dataset reference tests now in Functional...
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2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
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2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
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2018-12-14
Jim Procter
JAL-3171 more complex project test - where sequences...
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2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
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2018-12-14
Jim Procter
JAL-3171 failing test for legacy projects and fixing...
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2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
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2018-12-14
Jim Procter
JAL-3171 failing test checking preservation of dataset
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2018-11-20
Jim Procter
JAL-3127 Sequence ID Colour and nominal spanish translation
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2018-11-19
Jim Procter
JAL-3127 javadoc, don’t darken white when shading residues...
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2018-11-19
Jim Procter
JAL-3156 JAL-3127 code tidy
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2018-11-19
Jim Procter
JAL-3156 javadoc re JAL-3127 and FIXME to make AlignmentI...
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2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
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2018-11-19
Jim Procter
JAL-3127 JAL-2773 don’t need to call paintAlignment...
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2018-11-19
Jim Procter
JAL-3127 tidier tree group colour -> view propagation
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2018-11-09
Jim Procter
JAL-3127 polished setColor after review
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2018-10-16
Jim Procter
JAL-3127 always look up sequence ID colour from view...
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2018-10-16
Jim Procter
JAL-3127 tidy up terminology in colour schemes help...
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2018-10-16
Jim Procter
JAL-3127 updated colours menu and tree view documentation
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2018-10-16
Jim Procter
JAL-3127 reinstate ability to set sequence ID colour...
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2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propagate...
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2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
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2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
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2018-10-09
Jim Procter
JAL-3127 Colour sequences by ID - need to check that...
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2018-10-09
Jim Procter
JAL-3127 TODO - resolve reference to Viewport for group...
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2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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2018-09-19
Jim Procter
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
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2018-09-19
Jim Procter
Merge branch 'cherrypick/JAL-2808_notabs' into develop
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2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
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2018-09-18
Jim Procter
JAL-3035 more dedasification
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2018-09-18
Jim Procter
JAL-2865 release notes
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2018-09-12
Jim Procter
Merge branch 'merge/JAL-3091_JAL-3111_develop_211'...
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2018-09-11
Jim Procter
JAL-3112 increased TEST_TIMEOUT to 9000ms - needed...
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2018-09-11
Jim Procter
JAL-3112 Use classgraph to reconstruct the classpath...
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2018-09-11
Jim Procter
Merge branch 'merge/JAL-3091_JAL-3111_develop_211'...
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2018-09-11
Jim Procter
JAL-3111 drop hts-1.33 as a dependency (in favour of...
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2018-09-11
Jim Procter
Merge branch 'merge/JAL-3091_JAL-3111_develop_211'...
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2018-09-11
Jim Procter
Merge branch 'releases/Release_2_11_Branch' into merge...
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2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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2018-09-09
Jim Procter
JAL-3091 changed release date to 10th September - tweaked...
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2018-09-09
Jim Procter
JAL-3106 normalise extension before checking if it...
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2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
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2018-09-07
Jim Procter
JAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...
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2018-09-07
Jim Procter
JAL-2988 if selected file is null (On Java 10/OSX ...
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2018-09-07
Jim Procter
JAL-2988 workaround: overload getSelectedFile() because...
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2018-09-07
Jim Procter
JAL-3106 use .jvp as default
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2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
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2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
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