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Merge branch 'develop' into features/r2_11_2_alphafold/JAL-629
2023-01-06
Ben Soares
JAL-3416 remove a missed panel titlebar icon in TreePanel
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2023-01-06
Ben Soares
JAL-3416 Fix file permissions on bundled macOS JREs
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2023-01-06
Ben Soares
JAL-4111 Added commit and date text to splashscreens...
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2023-01-05
Ben Soares
JAL-4111 improvement to convert -draw argument
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2023-01-05
Ben Soares
JAL-4111 Use ImageMagick to add commit and build time...
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2023-01-05
Ben Soares
JAL-4111 Fixed channel.props to allow replacement of...
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2022-12-22
Ben Soares
JAL-4111 Allow -PCHANNEL=DEVELOP-version for new appbase...
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2022-12-19
Ben Soares
JAL-629 Add image output and quit
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2022-12-15
Ben Soares
JAL-629 move SubId to more logical place. Attempt removal...
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2022-12-14
Ben Soares
JAL-629 Open Structure Viewer from cmdline
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2022-12-09
Ben Soares
JAL-629 null check, fixed tests!
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2022-12-08
Ben Soares
JAL-629 fix opening files
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2022-12-08
Ben Soares
JAL-629 stray code deleted
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2022-12-08
Ben Soares
JAL-629 Allow attachment of pAE file to a particular...
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2022-12-05
Ben Soares
JAL-629 implementation of --tempfac options
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2022-11-30
Ben Soares
JAL-4101 Updated Rfam* tests
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2022-11-30
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
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2022-11-29
Ben Soares
JAL-4101 Updated Rfam* tests
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2022-11-29
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
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2022-11-23
Ben Soares
JAL-629 Doing things with the command line arguments
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2022-11-17
Ben Soares
JAL-4019 Clarification of position on 'X' in help text
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2022-11-16
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG_MODE...
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2022-11-16
Ben Soares
JAL-3416 make flatlaf default for linux
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2022-11-16
Ben Soares
JAL-4019 finalised a boolean option and tidied some...
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2022-11-14
Ben Soares
JAL-4019 Put original test back
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2022-11-14
Ben Soares
JAL-4019 Make diagnostic message debug level
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2022-11-13
Ben Soares
JAL-4019 small colour fix for X in the documentation
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2022-11-13
Ben Soares
JAL-4019 attribution to Suzanne
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2022-11-13
Ben Soares
JAL-4019 Help pages for Nucleotide Ambiguity colour...
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2022-11-13
Ben Soares
JAL-4019 small but important corrections to array order...
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2022-11-13
Ben Soares
JAL-4019 Added tests for new Nucleotide sequence detection
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2022-11-13
Ben Soares
JAL-4019 improvement to short sequence nucleotide detection...
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2022-11-10
Ben Soares
JAL-4019 Nucleotide Ambiguity Colour Scheme added....
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2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
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2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG_MODE...
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2022-11-09
Ben Soares
JAL-3416 Add necessary logo to non-internal Frames
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2022-11-09
Ben Soares
Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG_MODE...
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2022-11-09
Ben Soares
JAL-3416 Remove all JFrame/JInternalFrame icons (set...
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2022-11-09
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handling...
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2022-11-09
Ben Soares
JAL-1988 JAL-3772 Test for FORCE_QUIT whilst saving...
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2022-11-08
Ben Soares
Merge branch 'bug/JAL-1988_JAL-3772_improved_quit_handling...
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2022-11-08
Ben Soares
JAL-1988 JAL-3776 Formatting JvOptionPane
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2022-11-08
Ben Soares
JAL-1988 JAL-3772 Tests for various quitting scenarios
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2022-11-08
Ben Soares
JAL-1988 JAL-3772 Fixes highlighted by tests
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2022-11-04
Ben Soares
Merge branch 'merge/JAL-4054+JAL-4064' into ben-big...
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2022-11-04
Ben Soares
JAL-3416 Added logoIcon to quit (and potentially other...
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2022-11-04
Ben Soares
JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
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2022-11-04
Ben Soares
JAL-4064 JAL-4054 Combined install4j10 template with...
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2022-11-04
Ben Soares
JAL-4054 Altered file association templates and generated...
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2022-11-03
Ben Soares
JAL-3416 File Chooser iconified, JvOptionPanes iconified...
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2022-11-03
Ben Soares
JAL-1988 JAL-3772 Allow other window closing dialogs...
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2022-11-03
Ben Soares
JAL-3416 More JInternalFrame icons
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2022-11-03
Ben Soares
JAL-1988 JAL-3772 Tidying of unspecified Callable declaratio...
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2022-11-03
Ben Soares
JAL-3416 Start to add JInternalFrame icons (to replace...
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2022-11-02
Ben Soares
JAL-1988 JAL-3772 Moving packages to somewhere more...
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2022-11-01
Ben Soares
JAL-3416 set flatlaf default drag mode to LIVE_DRAG_MODE
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2022-11-01
Ben Soares
JAL-1988 JAL-3772 Change default alignmentviewport...
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2022-11-01
Ben Soares
JAL-4064 tidying build.gradle
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2022-11-01
Ben Soares
JAL-4064 re-added bundled macOS JREs as Filesets, which...
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2022-11-01
Ben Soares
JAL-4064 Cleaned up file sets in install4j template...
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2022-11-01
Ben Soares
JAL-4064 Download JRE/JDKs from Azul if not os/arch...
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2022-10-29
Ben Soares
JAL-1988 JAL-3772 removed a debugging log line
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2022-10-28
Ben Soares
JAL-1988 JAL-3772 Removed 'Wait' button from waitDialog...
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2022-10-28
Ben Soares
JAL-1988 JAL-3772 Fixed wait between waitDialog appearances...
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2022-10-27
Ben Soares
JAL-1988 Allow generic Container object in JvOptionPane...
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2022-10-27
Ben Soares
Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_q...
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2022-10-27
Ben Soares
JAL-4083 don't need globalUseScriptWait after all,...
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2022-10-27
Ben Soares
JAL-4083 only set globalUseScriptWait if needed
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2022-10-27
Ben Soares
JAL-4083 Use jmolViewer.scriptWait instead of jmolViewer...
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2022-10-26
Ben Soares
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2022-10-26
Ben Soares
JAL-3416 (and others) increasing number of STDERR lines...
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2022-10-25
Ben Soares
JAL-3416 Making FlatLaF default for macs due to a problem...
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2022-10-24
Ben Soares
JAL-1988 JAL-3772 wait timer working first time but...
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2022-10-24
Ben Soares
JAL-1988 JAL-3772 Non-blocking modal dialogs for unsaved...
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2022-10-11
Ben Soares
JAL-4014 Changed gecos display names to match labels...
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2022-09-29
Ben Soares
Merge branch 'develop' into bug/JAL-1988_JAL-3772_improved_q...
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2022-09-26
Ben Soares
JAL-1988 JAL-3772 linked undostack to saved changes...
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2022-09-26
Ben Soares
JAL-1988 better wording for quit dialog
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2022-09-23
Ben Soares
JAL-1988 JAL-3772 Quit confirmation dialog boxes with...
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2022-09-23
Ben Soares
JAL-3676 extra information about jalview_properties...
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2022-09-23
Ben Soares
JAL-1988 property based fake delay whilst saving project...
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2022-08-23
Ben Soares
JAL-4014 JAL-4063 Added gecos colourScheme names (INFO...
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2022-07-26
Ben Soares
JAL-4036 Fixed the virus_host_id query field
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2022-07-26
Ben Soares
JAL-4036 Added text to help about different number...
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2022-07-25
Ben Soares
JAL-4036 updated help about new UniProt API
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2022-07-25
Ben Soares
JAL-4036 moved a comment block
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2022-07-25
Ben Soares
JAL-4034 button looks better also on other OSes with...
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2022-07-22
Ben Soares
JAL-4036 Changes made from code review CR-JAL-265
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2022-07-22
Ben Soares
JAL-4036 Add getDbName to the GFTSPanelI and add an...
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2022-07-22
Ben Soares
JAL-4036 removing the query field code from the dropdown...
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2022-07-21
Ben Soares
JAL-4036 Don't autosearch changing index when autosearch...
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2022-07-21
Ben Soares
JAL-4036 add search fieldname to dropdown list
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2022-07-21
Ben Soares
JAL-4036 removed often duplicated pluralisation in...
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2022-07-21
Ben Soares
JAL-4036 New configuration, target and pagination process...
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2022-07-15
Ben Soares
JAL-4034 Use the new non-modal JDialog for 3DBeacons...
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2022-07-15
Ben Soares
JAL-4034 Allow request for non-modal JDialog, which...
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2022-07-12
Ben Soares
JAL-4034 change to jalview property name
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2022-07-12
Ben Soares
JAL-4034 showConfirmDialog works for both desktop and...
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2022-07-11
Ben Soares
JAL-4034 Non-blocking 3D Beacons query after warning...
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2022-07-11
Ben Soares
JAL-4034 allow a jalview_property to set the threshold...
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