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2019-09-26	Jim Procter	JAL-3070 allow SequenceI.findPositions(0,column+1)...	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 cope when dataset sequence is passed	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 JAL-3066 formatting	commit \| commitdiff \| tree
2019-09-26	Jim Procter	JAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(AlignmentAn...	commit \| commitdiff \| tree
2019-09-24	Jim Procter	JAL-3070 tidying	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3066 JAL-3070 pull up non-jabaws specific service...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 configure annotation service manager from...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 rename AbstractJabaCalcWorker to SeqAnnotationServi...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 ensure RNAAliFold annotation rows display...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 formatting	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 detect presence of existing JABA RNAAliFold...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 match AbstractJabaCalcWorker’s annotation...	commit \| commitdiff \| tree
2019-09-23	Jim Procter	JAL-3070 javadoc for (mostly) jabaws specific methods	commit \| commitdiff \| tree
2019-09-20	Jim Procter	JAL-3070 rough-and-ready refactor of JABA SequenceAnnotation...	commit \| commitdiff \| tree
2019-09-20	Jim Procter	JAL-3070 JAL-1379 deferred work on annotation based...	commit \| commitdiff \| tree
2019-09-20	Jim Procter	JAL-3070 JAL-2507 fix up test output and honour the...	commit \| commitdiff \| tree
2019-09-17	Jim Procter	JAL-3432 hide the slider when validator has no min...	commit \| commitdiff \| tree
2019-09-06	Jim Procter	JAL-3066 fix compile error (@matesuz - this will conflict...	commit \| commitdiff \| tree
2019-09-06	Jim Procter	JAL_1426 JAL-3066 update Apache James mime parser and...	commit \| commitdiff \| tree
2019-08-13	Jim Procter	JAL-3362 keep Java 1.8 build happy by specifying generic...	commit \| commitdiff \| tree
2019-08-13	Jim Procter	Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...	commit \| commitdiff \| tree
2019-07-15	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	commit \| commitdiff \| tree
2019-07-11	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3070 standard way of storing/recovering documentation...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3070 remove final reference to Jws2Instance	commit \| commitdiff \| tree
2019-07-10	Jim Procter	Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel...	commit \| commitdiff \| tree
2019-07-10	Jim Procter	JAL-3289 bamboo properties for ‘BUILD’ getdown channel	commit \| commitdiff \| tree
2019-07-10	Jim Procter	Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3111 correct JVL appbase for 2.10.5 via getdown	commit \| commitdiff \| tree
2019-07-04	Jim Procter	Merge branch 'task/JAL-3337-rm-lib-update-sourceDist...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 round-and-round the process source files again	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 more includes and excludes	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 remove the old lib directory !	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3337 rejig the source distribution generation to...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3111 replace year in header for help pages and...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	Merge branch 'task/JAL-3348_document_cli_memory_settings_whe...	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3111 JAL-3348 JVL file documentation	commit \| commitdiff \| tree
2019-07-04	Jim Procter	JAL-3348 revised bsoares memory settings documentation...	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 tidy up lists/indentation for release notes	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 Java 11 only and 'onwards'	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 more whatsNew tweaks	commit \| commitdiff \| tree
2019-07-03	Jim Procter	Merge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help...	commit \| commitdiff \| tree
2019-07-03	Jim Procter	JAL-3111 more whats new	commit \| commitdiff \| tree
2019-07-03	Jim Procter	Merge branch 'documentation/JAL-2843_featureFiltersFormat...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 updated what’s new… still more to come !	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 updated privacy statement to remove mention...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 JAL-3150 revised Jalview archive documentation...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 JAL-3348 removed pre 2.11 instructions on...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 JAL-3280 hide the version check preference...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 tidied up preferences dialog documentation	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 fix broken helpTOC link	commit \| commitdiff \| tree
2019-07-02	Jim Procter	Merge branch 'tasks/JAL-3311_removeVamsasMenu' into...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 release date now 4th July 2019 - codename...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 formatting	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 new known defect from JAL-797	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3111 whats new and JAL-2738 JAL-2743 expanded help...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3337 gradle.properties for publish help as html...	commit \| commitdiff \| tree
2019-07-02	Jim Procter	JAL-3337 publish help as html pages with GA tracker...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 release notes for JAL-3330 JAL-3021 (tweak...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	Merge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceInfo_wi...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 release notes for JAL-2820 JAL-2207	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 backed out report of fix to JAL-3178 in release...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 JAL-3340 JAL-3184 JAL-3338 new known defects	commit \| commitdiff \| tree
2019-06-28	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3111 final release date for 2.11.0	commit \| commitdiff \| tree
2019-06-28	Jim Procter	JAL-3330 apply Ensembl feature settings when showing...	commit \| commitdiff \| tree
2019-06-27	Jim Procter	Merge branch 'JAL-3322_getdown_speed_improvement' into...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	Merge branch 'improvement/JAL-3322_getdown_splashscreen_visi...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	Merge branch 'develop' into improvement/JAL-3322_getdown_spl...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3111 release notes for JAL-3334 JAL-3330 and rejig...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	Merge branch 'bug/JAL-3330' into develop	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3334 fix - always load full SO to resolve the sequence...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3111 get rid of nasty tab characters	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3332 test to check for duplicate db sources and...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3330 JAL-3332 relocate and simplify BeforeClass...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3330 test to verify sub/attributeName array is...	commit \| commitdiff \| tree
2019-06-26	Jim Procter	JAL-3330 javadoc	commit \| commitdiff \| tree
2019-06-24	Jim Procter	JAL-3330 merge styles onto originating view after fetching...	commit \| commitdiff \| tree
2019-06-24	Jim Procter	JAL-3330 dbreffetcher: record any feature display models...	commit \| commitdiff \| tree
2019-06-24	Jim Procter	JAL-3330 merge styles onto originating views when show...	commit \| commitdiff \| tree
2019-06-24	Jim Procter	JAL-3330 mergeFeatureStyles - needs test coverage	commit \| commitdiff \| tree
2019-06-24	Jim Procter	JAL-3111 formatting	commit \| commitdiff \| tree
2019-06-24	Jim Procter	JAL-3111 JAL-2069 JAL-2808 documentation for feature...	commit \| commitdiff \| tree
2019-06-21	Jim Procter	JAL-3111 added Colour By ID and an overview of Jalview...	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 JAL-2962 JAL-2903 JAL-2986 release notes	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 last final release date for 2.11.0 !	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 2.11 improvement JAL-3205 JAL-3203	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 JAL-1424 release notes	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 JAL-2816 docs	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 signed off ’done’ issues in Jira as of now:	commit \| commitdiff \| tree
2019-06-20	Jim Procter	JAL-3111 JAL-3130 JAL-3235 Java 11 specific known defects...	commit \| commitdiff \| tree
2019-06-19	Jim Procter	Merge branch 'documentation/JAL-3111_release_211' into...	commit \| commitdiff \| tree
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