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2006-05-10	amwaterhouse	Create sequence mapping for annotations	commit \| commitdiff \| tree
2006-05-10	amwaterhouse	addAnnotation with seqRef	commit \| commitdiff \| tree
2006-05-10	amwaterhouse	Changes case to end of alignment	commit \| commitdiff \| tree
2006-05-10	amwaterhouse	remove import	commit \| commitdiff \| tree
2006-05-10	amwaterhouse	Save seqref with annotations	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	spelling err	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	2.08.1	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	Make nullFrame only once	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	Remove unnecessary panel, also nullFrame created only...	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	Middle mouse to compress alignment	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	Check that fontsize > 0	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	Toggle Case added	commit \| commitdiff \| tree
2006-05-02	amwaterhouse	Toggle case added to popup menu	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	Remove edit menu if no group defined	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	Maintain original transparency setting	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	Change name to editMenu	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	If Mac, use the fillRoundRect method	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	Forces init of alignPanel if annotations added	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	Fixes redraw top of group bug	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	If no group, hide menu	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	If mac, use the fillRoundRect	commit \| commitdiff \| tree
2006-05-01	amwaterhouse	java 1.1 compatibility	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Helix sizes	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Make sure end is less than sequence width	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Group width -1	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Watch for exceeding width limit	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	If autoCalculate selected, recalculate immediately	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Back to gray line	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Back to gray line	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	validCharWidth moved to viewport	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Annoying little line at end of wrapped alignment	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	validCharWidth checks	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Edit menu added	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Add to palette layer	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Helix glyphs fixed	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Case sensitive	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	changeCase	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Helix glyphs drawn correctly	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Dont select groups on ids	commit \| commitdiff \| tree
2006-04-28	amwaterhouse	Case shifter	commit \| commitdiff \| tree
2006-04-21	amwaterhouse	Alignment compression on middle mouse button	commit \| commitdiff \| tree
2006-04-21	amwaterhouse	Modified sequence selection	commit \| commitdiff \| tree
2006-04-19	amwaterhouse	Multiple views, alignpanels not being used	commit \| commitdiff \| tree
2006-04-19	amwaterhouse	Alignment might not have any annotations	commit \| commitdiff \| tree
2006-04-18	amwaterhouse	-1 from east scale, wrapped alignment	commit \| commitdiff \| tree
2006-04-13	amwaterhouse	showInternalMessage jdk1.5 bug	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	add back in again	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	old image	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	old images	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	New images	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	2.08, not 2.07	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	To export page	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Links	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	2.08 update	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Displays error line on error	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Just removing new line character	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Editing tab	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	del and backspace do the same thing	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Release Date width	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	tab name is editing	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Protein desc bug fixed	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	dont need to set - to -	commit \| commitdiff \| tree
2006-04-10	amwaterhouse	Fixed protein desc bug	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Takes popup away from mouseevent, prevents immediate...	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	No need for vetoablechange	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Set all gaps to - symbol	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	padGaps set in preferences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Padgaps pref set	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	ModellerOutput set in preferences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Autocalculate consensus set in preferences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Scroll cursor wrapped alignment	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	+1 error in group edit all sequences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	remove new line in alquality	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Must check consensus length if autocalculate off	commit \| commitdiff \| tree
2006-04-06	amwaterhouse	Hide ref to HiddenRegion	commit \| commitdiff \| tree
2006-04-06	amwaterhouse	Must copy feature settings from one frame to another...	commit \| commitdiff \| tree
2006-04-06	amwaterhouse	Must copy feature settings from one frame to another...	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Maintain feature order	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Save annotationColours	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Public get methods	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	public get methods	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Save graph threshold and annotation colours	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	2.08 updates	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Order of menuitems	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Turn off validation for speed	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	No need for minorSpacing	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Shift also for group editing	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Padgap history	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Note on build target being usage	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Default raget is :usage	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	2.08 update	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	2.08 updates	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Modified for 2.08	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	New files	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Draw threshold over graph	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	loadDataFile is public	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Add annoations from the command line	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Overview follows cursor movement	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Set keyboard numbers to null if esc pressed	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Keyboard editing added to applet	commit \| commitdiff \| tree
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