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2022-02-15	Mateusz Warowny	JAL-3878 Add universal id generator to MathUtils.	commit \| commitdiff \| tree
2021-12-23	Mateusz Warowny	Merge branch 'JAL-3927_ws_preferences_dialog_fix' into...	commit \| commitdiff \| tree
2021-12-23	Mateusz Warowny	Merge branch 'update/JAL-3066_updated_testng' into...	commit \| commitdiff \| tree
2021-11-25	Mateusz Warowny	JAL-3927 Make url checks asynchronous in preferences...	commit \| commitdiff \| tree
2021-11-23	Mateusz Warowny	JAL-3066 Fix ambiguous assertEquals casting values...	commit \| commitdiff \| tree
2021-11-18	Mateusz Warowny	JAL-3066 Remove redundant throws declaration from SlivkaPara...	commit \| commitdiff \| tree
2021-11-16	Mateusz Warowny	Merge branch 'JAL-3866_RNAalifold-slivka-client' into...	commit \| commitdiff \| tree
2021-11-16	Mateusz Warowny	Merge branch 'alpha/JAL-3899_deuniquify_refactor' into...	commit \| commitdiff \| tree
2021-10-07	Mateusz Warowny	JAL-3899 Replace prints with logger messages.	commit \| commitdiff \| tree
2021-10-06	Mateusz Warowny	JAL-3899 Update usages of uniquify and deuniquify.	commit \| commitdiff \| tree
2021-10-06	Mateusz Warowny	JAL-3899 Refactor sequence de/uniquification.	commit \| commitdiff \| tree
2021-09-02	Mateusz Warowny	Add RNAalifold service instance to slivka web services.	commit \| commitdiff \| tree
2021-07-29	Mateusz Warowny	Merge branch 'improvement/JAL-3848_slivka_0.8' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge branch 'bug/JAL-3807_jpred-with-slivka' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge commit '0b438477b16470202bddfecb54e0587036b37202...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	JAL-3066 Fix NullPointerException thrown when showing...	commit \| commitdiff \| tree
2021-07-23	Mateusz Warowny	JAL-3848 Update slivka client javajs library.	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 print exception for failed align jobs	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 add latest slivka-client fixes.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'jpred-fix' into bug/JAL-3807_jpred-with...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3807 Fix SlivkaWSInstance not fetching alignments.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'bug/JAL-3849_aacon-parameters' into improvemen...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3690 Remove references to old AlignCalcManager.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 SlivkaParamSet: reformat code and add service...	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 Update slivka client library.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3849 Remove join() which blocked the ui.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Add single sequence capabilities to jws2...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Move new JPred client to the jws2 package.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3807 - Re-implement results processing.	commit \| commitdiff \| tree
2021-02-22	Mateusz	JAL-3807 JPred can now successfully submit and track...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3809_ws_params_dialog_fix' into...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3810_annotation_ws_stopping_abruptly...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	JAL-3809 - Fixed param edit dialog for jalviewjs.	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'feature/JAL-3690_callback-based-web-services...	commit \| commitdiff \| tree
2021-02-22	Mateusz	Merge branch 'feature/JAL-3690_callback-based-web-services...	commit \| commitdiff \| tree
2021-02-05	Mateusz Warowny	JAL-3810 - Add trace method to javascript implementation...	commit \| commitdiff \| tree
2021-02-05	Mateusz Warowny	JAL-3810 - Replace log.trace() calls with log.debug()	commit \| commitdiff \| tree
2021-01-27	Mateusz	JAL-3690 Introduce AlignCalcManager2 tests.	commit \| commitdiff \| tree
2021-01-22	Mateusz	Merge branch 'Jalview-JS/develop' into feature/JAL...	commit \| commitdiff \| tree
2021-01-22	Mateusz	JAL-3690 AlignCalcManager - add full support for oneshot...	commit \| commitdiff \| tree
2021-01-22	Mateusz	JAL-3690 AACon ws menu entry fix.	commit \| commitdiff \| tree
2021-01-22	Mateusz	JAL-3690 Allow unregistered workers to be run with...	commit \| commitdiff \| tree
2021-01-22	Mateusz	JAL-3690 Fix typo in enum name in slivka client.	commit \| commitdiff \| tree
2021-01-22	Mateusz	JAL-3690 Fixed slivka wsmenu categories.	commit \| commitdiff \| tree
2021-01-18	Mateusz	Merge remote-tracking branch 'origin/merge/Jalview...	commit \| commitdiff \| tree
2020-12-11	Mateusz	JAL-3690 Let's enable web services (seriously this...	commit \| commitdiff \| tree
2020-11-27	Mateusz Waronwy	JAL-3690 List.copyOf() workaround	commit \| commitdiff \| tree
2020-11-13	Mateusz Waronwy	JAL-3690 separate startup and poll code in SeqAnnotationCalc...	commit \| commitdiff \| tree
2020-11-12	Mateusz Waronwy	JAL-3690 - fixed state inconsistency when restarting...	commit \| commitdiff \| tree
2020-11-11	Mateusz Waronwy	JAL-3690 partially reworked AlignCalcManager	commit \| commitdiff \| tree
2020-10-26	Mateusz Waronwy	JAL-3690 - introduce shutdown method that cleans up...	commit \| commitdiff \| tree
2020-10-21	Mateusz Waronwy	JAL-3690 Documentation for AlignCalcListener	commit \| commitdiff \| tree
2020-10-21	Mateusz Waronwy	JAL-3690 Catch and notify about worker cancellation...	commit \| commitdiff \| tree
2020-10-21	Mateusz Waronwy	JAL-3690 Fix concurrent modification exception when...	commit \| commitdiff \| tree
2020-10-21	Mateusz Waronwy	JAL-3690 Documentation for AlignCalcManagerI2	commit \| commitdiff \| tree
2020-10-21	Mateusz Warowny	JAL - 3690 AlignCalc rebuilt - FutureTask-based manager	commit \| commitdiff \| tree
2020-07-22	Mateusz Warowny	JAL-3690 changed AWSThread to use Timer instead	commit \| commitdiff \| tree
2020-07-20	Mateusz Warowny	JAL-3690 alternative servers menu fix	commit \| commitdiff \| tree
2020-07-17	Mateusz Warowny	JAL-3690 restore jws1 JPred	commit \| commitdiff \| tree
2020-07-16	Mateusz Warowny	JAL-3690 switching to CompletableFuture to allow chaining	commit \| commitdiff \| tree
2020-07-15	Mateusz Warowny	JAL-3690 mark JalviewChangeSupport as deprecated	commit \| commitdiff \| tree
2020-07-15	Mateusz Warowny	JAL-3690 refactoring web-services discovery	commit \| commitdiff \| tree
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update...	commit \| commitdiff \| tree
2020-07-09	Mateusz Warowny	Merge branch 'feature/JAL-3686_slivka_client_js_update...	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	JAL-3683 retrieve job status to output stream	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	JAL-6386 update slivka client for j2s compatibility	commit \| commitdiff \| tree
2020-07-08	Mateusz Warowny	Merge branch 'feature/JAL-3515-slivka-preferences'...	commit \| commitdiff \| tree
2020-02-06	MMWarowny	Implement simple media type recognition.	commit \| commitdiff \| tree
2020-02-04	MMWarowny	JAL-3515 Change to JvOptionPane wrapper	commit \| commitdiff \| tree
2020-02-04	MMWarowny	JAL-3515 Build a WSPreferences page for Slivka services.	commit \| commitdiff \| tree
2020-02-04	MMWarowny	JAL-3515 Extract core WSDiscoverer methods to a separate...	commit \| commitdiff \| tree
2020-02-04	MMWarowny	JAL-3515 Update Slivka client library	commit \| commitdiff \| tree
2019-12-05	MMWarowny	JAL-3066 Comment on ambiguous parameter parsing.	commit \| commitdiff \| tree
2019-12-05	MMWarowny	JAL-3066 Change Slivka connection to https	commit \| commitdiff \| tree
2019-11-28	MMWarowny	JAL-3066 Fix incorrect URL resolving with /slivka prefix.	commit \| commitdiff \| tree
2019-11-15	MMWarowny	JAL-3066 Change server to www.compbio.dundee.ac.uk...	commit \| commitdiff \| tree
2019-11-04	MMWarowny	Include missing job states.	commit \| commitdiff \| tree
2019-10-17	Mateusz Warowny	JAL-3066 Slivka client update for changed api endpoints.	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	JAL-3066 Create labels for fields and hack it to work...	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-11	Mateusz Warowny	JAL-3066 change service type naming to avoid menu entry...	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	JAL-3066 Read parameters directly from args list allowing...	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	Update slivka-client library: multiple form field values.	commit \| commitdiff \| tree
2019-10-09	Mateusz Warowny	JAL-3066 Fix log files retrieval.	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	Jal-3066 Retrieve job log and error log from the server.	commit \| commitdiff \| tree
2019-10-07	Jim Procter	Revert "JAL-3070 JAL-3066 fix initialisation of slivka...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	JAL-3066 AACon: pass the instance name of the service...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	JAL-3066 Check if annotation and features are present...	commit \| commitdiff \| tree
2019-10-07	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-04	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-10-01	Mateusz Warowny	JAL-3066 Sequence annotation services.	commit \| commitdiff \| tree
2019-09-27	Mateusz Warowny	JAL-3066 Automatically discoverable Protein sequence...	commit \| commitdiff \| tree
2019-09-27	Mateusz Warowny	Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterf...	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	JAL-3066 Annotation Service Instance stub	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	SlivkaWSDiscoverer formatting fix	commit \| commitdiff \| tree
2019-09-23	Mateusz Warowny	JAL-3066 Move common web service methods to abstract...	commit \| commitdiff \| tree
2019-09-19	Mateusz Warowny	JAL-3066 Auto discover multiple sequence alignment...	commit \| commitdiff \| tree
2019-09-16	Mateusz Warowny	Set the initial value of the choice field to the default...	commit \| commitdiff \| tree
2019-09-16	Mateusz Warowny	Add the remaining msa services to the Discoverer	commit \| commitdiff \| tree
2019-09-11	Mateusz Warowny	Change choice field to use dropbox instead of radio...	commit \| commitdiff \| tree
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