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2006-04-07	amwaterhouse	Padgaps pref set	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	ModellerOutput set in preferences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Autocalculate consensus set in preferences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Scroll cursor wrapped alignment	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	+1 error in group edit all sequences	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	remove new line in alquality	commit \| commitdiff \| tree
2006-04-07	amwaterhouse	Must check consensus length if autocalculate off	commit \| commitdiff \| tree
2006-04-06	amwaterhouse	Hide ref to HiddenRegion	commit \| commitdiff \| tree
2006-04-06	amwaterhouse	Must copy feature settings from one frame to another...	commit \| commitdiff \| tree
2006-04-06	amwaterhouse	Must copy feature settings from one frame to another...	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Maintain feature order	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Save annotationColours	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Public get methods	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	public get methods	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Save graph threshold and annotation colours	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	2.08 updates	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Order of menuitems	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Turn off validation for speed	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	No need for minorSpacing	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Shift also for group editing	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Padgap history	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Note on build target being usage	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	Default raget is :usage	commit \| commitdiff \| tree
2006-04-05	amwaterhouse	2.08 update	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	2.08 updates	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Modified for 2.08	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	New files	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Draw threshold over graph	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	loadDataFile is public	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Add annoations from the command line	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Overview follows cursor movement	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Set keyboard numbers to null if esc pressed	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Keyboard editing added to applet	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	set current tree once the tree is prepared	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Jalview2XML does not use static load	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Pad gaps removes excess gaps	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Specify com.stevesoft.pat.Regex	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Autocalculate consensus	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	More keys for editing	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Get hiddenBoundaryLeft and right	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Jalview2XML does not use static load anymore	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Disable hide regions	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Scrolls if dragged off the screen	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Keyboard editing	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Cursor colour	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Set current tree when ready	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Allows loading of archive XML	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	For archive only	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Uses descriptors	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Binding with descriptors	commit \| commitdiff \| tree
2006-04-04	amwaterhouse	Namespace changes	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Feature settings	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Has its own featureRenderer	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Group colours not used	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Associated Data menu item	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Cursor added	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Typo	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	fr.transferSettings	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	FeatureSettings bug fixed	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Feature added to group search results	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Groups compatibility	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	No need to hava SSX as array	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	CursoMode added	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Load data file added	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Trim line	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Features added to group Uniprot	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Add check if sequence already exists	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	FeaturesGroup added to constructor	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	1 too many	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Features added to group search results	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	-1 +1 check removed	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	1 too many in drawgraph	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Annotation colour scheme added	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Called from AnnotationColourChooser and Feature Settings	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Annotation colours added to applet	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	ZSort no longer static	commit \| commitdiff \| tree
2006-03-24	amwaterhouse	Has own featurerenderer	commit \| commitdiff \| tree
2006-03-20	amwaterhouse	Rearranged text	commit \| commitdiff \| tree
2006-03-20	amwaterhouse	Correct reference	commit \| commitdiff \| tree
2006-03-20	amwaterhouse	typo	commit \| commitdiff \| tree
2006-03-20	amwaterhouse	Reference added	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Fix for Finn Drablos bug. Must use equals for comparing...	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	historyItem.restore	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	HideSequences	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	getWidth and getHeight just once	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	-1 to drawGraphs	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	isVisible and hiddenboundary added	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	UserColors not used here	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Hidden Rows	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Reveal	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Faster	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Hide Sequences	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Tooltip for hidden columns	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Hidden column adjustments	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Scrolls when editing	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Gethidden sequences	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	HiddenSequence methods	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	getHiddenSequences	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Keeps a record of hidden sequences	commit \| commitdiff \| tree
2006-03-16	amwaterhouse	Allow loading from Zip files	commit \| commitdiff \| tree
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