| 2005-01-24 |
amwaterhouse | now uses 1.1 friendly regex
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commit | commitdiff | tree |
| 2005-01-24 |
amwaterhouse | Clear selection when deleting all groups
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commit | commitdiff | tree |
| 2005-01-24 |
amwaterhouse | Allow removal of colour when deleting groups
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | remove a few imports
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | Nucleotide colours added
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | New colourScheme
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | Create group from search added
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | Delete groups added, nucleotide color added
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | ForegroundColor is darker.darker.darker
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | if stretchGroup is null, set avRubberbandGroup new...
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | <= y2 is now < y2
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | Commented out code removed
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | Fill rect white
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | Check if graphics is null in labelSize
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | False changed to true
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | SuperGroup added
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | System.out removed
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commit | commitdiff | tree |
| 2005-01-21 |
amwaterhouse | SuperGroups added
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | new images
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | Clustal align DNA spinner added
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | Fix overviewPanel bugs
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | RefreshPanels after a colour change
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | Dont use addToDesktop for splashscreen
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | ClustalX added to ColourProperties
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | SetSecondaryPanel
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | SetSecondaryPanel visible
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | Works out exisiting colur of a group
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commit | commitdiff | tree |
| 2005-01-17 |
amwaterhouse | New class
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commit | commitdiff | tree |
| 2005-01-14 |
amwaterhouse | Spaces
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commit | commitdiff | tree |
| 2005-01-14 |
amwaterhouse | Various color bugs sorted out
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commit | commitdiff | tree |
| 2005-01-14 |
amwaterhouse | Dispalys rule along top of output
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commit | commitdiff | tree |
| 2005-01-14 |
amwaterhouse | Hscrollbar is shortened
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commit | commitdiff | tree |
| 2005-01-14 |
amwaterhouse | Return color.white if a gap char is detected
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | getValue method added
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | Maintain PID or conservation status when changing colour
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | SequenceGroup is now an array
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | Send array of groups to renderer
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | Initial selection bug fixed
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | FindAllGroups added
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | Scrollbar at bottom of screen
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | GetResidueBoxColour altered for faster rendering
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | Renderer already has graphics context
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | getResidueBoxColour has been removed for faster rendering
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commit | commitdiff | tree |
| 2005-01-13 |
amwaterhouse | Ignores gaps when searching
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commit | commitdiff | tree |
| 2005-01-12 |
amwaterhouse | Group editing is done by control and alt key down
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commit | commitdiff | tree |
| 2005-01-12 |
amwaterhouse | regular expression added
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commit | commitdiff | tree |
| 2005-01-12 |
amwaterhouse | delete gaps bug fixed
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commit | commitdiff | tree |
| 2005-01-12 |
amwaterhouse | must append file:/// at beginning of file launch
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commit | commitdiff | tree |
| 2005-01-10 |
amwaterhouse | Displays number of matches found in search
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | jalview URL updated and authors in about file
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | Mac osX doesnt like isControlDown, use alt instead
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | All optionpane messages must be added to Desktop.desktop
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | If screensize is small, setSize to be the screenSize
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | Doesn't draw the white box at the end of a line
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | Fixed bug in editing by group
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | Hide apply and undo buttons
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commit | commitdiff | tree |
| 2004-12-17 |
amwaterhouse | Use the isGap method in utils
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commit | commitdiff | tree |
| 2004-12-16 |
amwaterhouse | Output new alignment bug fixed
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commit | commitdiff | tree |
| 2004-12-16 |
amwaterhouse | ilen and jlen no longer +1
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commit | commitdiff | tree |
| 2004-12-16 |
amwaterhouse | Remove redundancy implemented
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | colours are right, but not the conservation bit!!
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | no need to send sequence to determine residue colour
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | Added for the moment, only used by ClustalxColourScheme
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | No need to sened sequence to determine residue colour
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | isGap method implemented in utils, and optimized
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | isGap method implemented in utils
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | GSlider replaces GConservationIncrementPanel
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | no more group editing mode. clustal implemented
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | Displays full id with the help of nowrap
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | New class
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | ColourScheme no longer requires sequence
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | End of GroupEditing, GroupDefiningMode!!!!!
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | Register with paintrefresher
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | If selection altered, update RubberbandGroup
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | All colours added, also sequence menu added
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | Right mouse brings up Popupmenu
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | ColourScheme findColour no longer needs sequence
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | If selection altered, update Rubberband group also
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | REpainting after graph panel setVisible fixed
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | SliderPanel added, edit is by mouse click
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | Removed, SliderPanel replaces this class
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commit | commitdiff | tree |
| 2004-12-15 |
amwaterhouse | isGap method added to utils
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Dont try{}catch the findColour method, lets fix this now
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | HTML ouput is now identical to onscreen view
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Enable PID menuitem
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | PID Colour scheme now operational!
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Add Jims name!
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Getcolours is not needed ????
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Scalepanel has new constructor
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Increment panel must call globalcolour or seqeuncegroup...
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Allow userdefined colours for groups
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Can now select groups using column selection
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Userdefinedcolours works for groups as well
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Hastable is not used anywhere
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | New class for defining groups and selections
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Copy, cut and move now done via popup menu
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Selection of sequences is continuous
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Drawing of group and rubberband corrected
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | Sequence selection now done via popup menu
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commit | commitdiff | tree |
| 2004-12-14 |
amwaterhouse | must allow for alignment width
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commit | commitdiff | tree |
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