| 2017-05-16 |
gmungoc | JAL-2525 put in missing "transcript" feature type
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 additional tests/asserts prior to refactoring
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commit | commitdiff | tree |
| 2017-05-16 |
gmungoc | JAL-2505 set SequenceFeature group in constructor
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2490 use findFeatures() for efficient feature overlap...
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2480 redundant code (from merge?) removed
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commit | commitdiff | tree |
| 2017-05-15 |
gmungoc | JAL-2480 redundant code removed
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2490 performant findFeaturesAtRes
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2483 efficient lookup of feature types and groups...
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2525 get sequence features for Ontology term(s...
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 more efficient contains check on add; tidied...
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 java.util.RangeComparator renamed IntRangeComparator
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 efficient test for features present on sequence
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commit | commitdiff | tree |
| 2017-05-12 |
gmungoc | JAL-2480 renamed java.util.RangeComparator to IntRangeComparator
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-1632 correct i18n and NPE
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2403 use preferred factory method to create score...
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2480 include sequenceFeatureStore in createDatasetSequence
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2483 JAL-2481 fixed findAllFeatures to handle null...
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commit | commitdiff | tree |
| 2017-05-09 |
gmungoc | JAL-2505 use constructors to set (what will be) final...
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-2505 set type,desc,begin,end,group,score in SequenceFeature
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-2505 refactored SequenceFeature construction so...
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-1933 Spanish tooltips for annotation
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | JAL-1632 i18n for warning messages
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commit | commitdiff | tree |
| 2017-05-08 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-2515'...
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commit | commitdiff | tree |
| 2017-05-05 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScreenFont
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2506 allow graduated colour as default in new Sequence...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2510 ensure modified feature type is displayed
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2504 allow feature type to be specified for Create...
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2505 delete and readd amended sequence feature
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commit | commitdiff | tree |
| 2017-05-04 |
gmungoc | JAL-2480 JAL-2505 guard against duplicating links
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 basic sanity test of fetching example accessions
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2246 test a Uniprot fetch
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2105 Ensembl REST now at 5.0
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commit | commitdiff | tree |
| 2017-05-03 |
gmungoc | JAL-2485 JAL-2246 test Uniprot FTS summary
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-1933 Spanish for Occupancy
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2499 inlined two 1-line methods
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside...
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commit | commitdiff | tree |
| 2017-05-02 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | JAL-2489 JAL-2371 reinstate calls to
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commit | commitdiff | tree |
| 2017-05-01 |
gmungoc | Merge remote-tracking branch
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commit | commitdiff | tree |
| 2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-28 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-27 |
gmungoc | JAL-2492 use SequenceFeatures.getNonPositionalFeatures()
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commit | commitdiff | tree |
| 2017-04-27 |
gmungoc | JAL-2480 don't allow null type in SequenceFeature
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commit | commitdiff | tree |
| 2017-04-26 |
gmungoc | JAL-2490 findFeaturesAtRes with performant feature...
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commit | commitdiff | tree |
| 2017-04-25 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | JAL-2487 remove redundant refreshGUI to minimise threading...
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-24 |
gmungoc | JAL-2424 final contig now an inclusive range
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2295 Spanish translations for superposition / errors
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2295 Spanish translations added
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2361 Spanish text added
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | JAL-2423 tweak tree panel title, add Spanish text
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commit | commitdiff | tree |
| 2017-04-21 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-20 |
gmungoc | JAL-2483 JAL-2481 findAllFeatures without scanning...
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | JAL-2435 mirror font changes with middle mouse drag
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | Merge branch 'develop' into features/JAL-2435splitScreenFont
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | JAL-2480 cache min-max score values per sequence and...
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commit | commitdiff | tree |
| 2017-04-19 |
gmungoc | JAL-2483 use SequenceFeatures to look up groups, types...
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 subtract from total length on deleting feature
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 more test coverage
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 test coverage / bug fixes / javadoc
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commit | commitdiff | tree |
| 2017-04-18 |
gmungoc | JAL-2480 SequenceFeaturesI encapsulates features api
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 comment updates
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 promote Range from test to src to replace...
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 tidied up / generalised binary search in FeatureStore
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | JAL-2446 add call to SequenceFeatures.delete(); use...
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | Merge branch 'develop' into features/JAL-2446NCList
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commit | commitdiff | tree |
| 2017-04-17 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2361 tweak layout of warning message
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 remove unused check for sequences aligned
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2403 ensure array held in Matrix is immutable
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2403 public static methods to convert distance...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel...
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commit | commitdiff | tree |
| 2017-04-12 |
gmungoc | JAL-2446 getGroups, getFeatures for positional/non...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 find feature types for one or more groups...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2403 improved ScoreModelI hierarchy as per Kira...
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 getFeatureTypesForGroup() added
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2428 Javadoc
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-11 |
gmungoc | JAL-2446 added getFeatureGroups
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2403 unit tests for PCA.computeSimilarity, signature...
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2403 removed remaining jvCalcMode references from PCA
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2416 test updated for reinstatement of '*' row...
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2446 SequenceFeatures.hasFeatures() added
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2446 FeatureStore.isEmpty() added
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commit | commitdiff | tree |
| 2017-04-10 |
gmungoc | JAL-2361 option to save on OK of changed named colour...
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commit | commitdiff | tree |
| 2017-04-09 |
gmungoc | JAL-2393 remove unused commented code
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commit | commitdiff | tree |
| 2017-04-07 |
gmungoc | JAL-2393 code tidying for review comments
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commit | commitdiff | tree |
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