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distinct methods for getting references to selected sequences or getting new seuqence...
2007-04-23
amwaterhouse
getColour method added
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2007-04-23
amwaterhouse
Check for null displayCharacters
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2007-04-23
amwaterhouse
Dbref fetcher takes sequences, not alignment
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2007-04-23
amwaterhouse
getColour added to structures
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2007-04-23
amwaterhouse
Test out new arrangement
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2007-04-23
amwaterhouse
Get colour from structure added
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2007-04-23
amwaterhouse
check dispalyChar is not null
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2007-04-23
amwaterhouse
Check displayChar is not null
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2007-04-23
amwaterhouse
Colour is null
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2007-04-23
amwaterhouse
remove seqref annotations
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2007-04-23
amwaterhouse
remove alignmentAnnotation added
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2007-04-23
amwaterhouse
Only fetch refs for seelcted sequences
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2007-04-19
amwaterhouse
REPLACE added to edit command
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2007-04-19
amwaterhouse
Only setDropTarget if Desktop is not null
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2007-04-18
amwaterhouse
Validate range for all annotations
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2007-04-18
amwaterhouse
Redundant code commented out
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2007-04-18
amwaterhouse
hastext = false
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2007-04-18
amwaterhouse
dont set seqref null if index incorrect
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2007-04-18
amwaterhouse
featureGroups not null
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2007-04-18
amwaterhouse
Pad gaps when annotation editing
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2007-04-18
amwaterhouse
quality has text false
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2007-04-18
amwaterhouse
Quality does not have text
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2007-04-18
amwaterhouse
Alignment of labels and text
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2007-04-18
amwaterhouse
checks for scrollbar height
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2007-04-18
amwaterhouse
Disable memory checker for now
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2007-04-18
amwaterhouse
adjustForAlignment on new seq ref
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2007-04-18
amwaterhouse
Check values not null in copy constructor
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2007-04-17
amwaterhouse
Applet remembers PDBEntries, can launch multiple structures...
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2007-04-17
amwaterhouse
Add system.out for Mcview / Jmol detection
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2007-04-17
amwaterhouse
Remove system.out
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2007-04-16
amwaterhouse
drawSequence must be synchronized
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2007-04-16
amwaterhouse
Too many calls to paintAlignment
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2007-04-13
amwaterhouse
FeatureRenderer takes alignmentPanel
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2007-04-13
amwaterhouse
Check alignment has same sequence
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2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
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2007-04-11
amwaterhouse
SetTargetColour before dialog.show
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2007-04-11
amwaterhouse
Modified to compile applet with Jmol jar present
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2007-04-11
amwaterhouse
Can add features with no group
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2007-04-11
amwaterhouse
Adjustment for hidden columns
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2007-04-11
amwaterhouse
Use same mouse events as scalePanel
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2007-04-11
amwaterhouse
Amend features/annotations in applet
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2007-04-11
amwaterhouse
Used several places
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2007-04-11
amwaterhouse
If hiddenColumns are null, then column is viisble
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2007-04-11
amwaterhouse
featureAdded not in applet
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2007-04-05
amwaterhouse
Paste menu item dispalyed on right click. Memory settings...
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2007-04-05
amwaterhouse
Pasted file doesnt have title and not reloadable
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2007-04-05
amwaterhouse
call getAllframes on desktop instance
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2007-04-04
amwaterhouse
newFEatures flag for seq type
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2007-04-04
amwaterhouse
Use newFeatures flag
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2007-04-04
amwaterhouse
combobox for overlapping features
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2007-04-04
amwaterhouse
paintALignment
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2007-04-04
amwaterhouse
flag for dasCoordSysFound added
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2007-04-04
amwaterhouse
Throw exception if pdb result size is zero
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2007-04-02
amwaterhouse
Allow for scroll bar height
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2007-04-02
amwaterhouse
New seq feature name not added here
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2007-04-02
amwaterhouse
getAllFeaturesAtRes replace by findFeaturesAtRes
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2007-04-02
amwaterhouse
addElement
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2007-04-02
amwaterhouse
destroy destroyed
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2007-04-02
amwaterhouse
destroy destroyed
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2007-04-02
amwaterhouse
Destroy alignment moved to finalize
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2007-04-02
amwaterhouse
Chain might be null
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2007-04-02
amwaterhouse
Destroy Alignment when closing frame
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2007-04-02
amwaterhouse
Destroy aligment method added
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2007-04-02
amwaterhouse
Must allow for scrollbar height
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2007-03-27
amwaterhouse
Pick atom highlighted
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2007-03-27
amwaterhouse
Updated PDB loading params
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2007-03-26
amwaterhouse
Jmol calls user colours
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2007-03-26
amwaterhouse
Jalview colour schemes added
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2007-03-26
amwaterhouse
Add seq mapping for multiple seq 2 pdbs
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2007-03-26
amwaterhouse
Menu changes
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2007-03-23
amwaterhouse
updates to console
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2007-03-23
amwaterhouse
slide is transparent to hidden columns
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2007-03-23
amwaterhouse
run and halt buttons must have listeners added
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2007-03-23
amwaterhouse
loadingFromArchive flag added
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2007-03-23
amwaterhouse
run halt hidden, help moved to menu item for stupid...
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2007-03-22
amwaterhouse
save structures
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2007-03-22
amwaterhouse
Commented out userDefColours for compilation. Class...
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2007-03-22
amwaterhouse
Now a JPanel, plus some modifications
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2007-03-22
amwaterhouse
Check exploded pos is not the same as current frame
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2007-03-22
amwaterhouse
Set gatherViewsHere false when making a new tab
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2007-03-22
amwaterhouse
Saves structures
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2007-03-22
amwaterhouse
Jalview colours added to Jmol
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2007-03-22
amwaterhouse
Saves Jmol status
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2007-02-27
amwaterhouse
Uncomment graphics 2d bit
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2007-02-27
amwaterhouse
Launch applet jmol
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2007-02-27
amwaterhouse
Use paintAlignment
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2007-02-27
amwaterhouse
check conservation length
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2007-02-27
amwaterhouse
Structure listener
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2007-02-27
amwaterhouse
remove p+3 < query.length
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2007-02-27
amwaterhouse
No longer use ref to seqcanvas for painting
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2007-02-27
amwaterhouse
blank space for chain name if empty
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2007-02-27
amwaterhouse
keep record of atomIndeX
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2007-02-27
amwaterhouse
jmol added
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2007-02-27
amwaterhouse
jmol
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2007-02-12
amwaterhouse
version 3.7
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2007-02-12
amwaterhouse
date added
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2007-02-12
amwaterhouse
>0 rather than -1 check
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2007-02-12
amwaterhouse
Reload jar files
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2007-02-12
amwaterhouse
Hashtable for previously loaded pdb files
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2007-02-12
amwaterhouse
Make checkbox bigger for text on mac
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