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JAL-3199 corrected sort menu items to JMenuItem
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-16
gmungoc
JAL-2922 update FeatureRenderer and repaint feature...
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2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
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2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14
gmungoc
JAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
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2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
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2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
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2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
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2018-03-14
gmungoc
JAL-2839 refactored out getNextVisibleSequenceRegion
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2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-13
gmungoc
JAL-2839 additional test case
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2018-03-13
gmungoc
JAL-2839 refactored analysis.Finder and tests
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2018-03-13
gmungoc
JAL-2839 addResult ignores duplicates
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2018-03-12
gmungoc
JAL-2933 remember Find position per viewport
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2018-03-12
gmungoc
JAL-2839 don't search minimised panels from Finder
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2018-03-09
gmungoc
JAL-2839 Finder refactoring prior to fixing the defect
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2018-03-08
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-08
gmungoc
JAL-2885 tests updated for code changes
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2018-03-08
gmungoc
JAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07
gmungoc
JAL-2922 [2] not [1] for Boolean column of table
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2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07
gmungoc
JAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07
gmungoc
Merge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07
gmungoc
JAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07
gmungoc
JAL-2925 handle empty annotation when copying group...
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2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-02-28
gmungoc
JAL-2924 no tooltip over null annotation positions
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2018-02-20
gmungoc
JAL-2897 updated unit test for code change
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2018-02-20
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2018-02-09
gmungoc
JAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09
gmungoc
JAL-2789 code format changes only (before functional...
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2018-02-09
gmungoc
JAL-2666 fix failure to scroll split alignment of height 1
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2018-02-08
gmungoc
JAL-2666 basic initial fix for split screen scroll bug
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2018-02-07
gmungoc
JAL-2808 ensure pattern field re-enabled when needed...
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-05
gmungoc
Merge branch 'spikes/mungo' into trialMerge
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-02
gmungoc
JAL-984 merged to spikes-mungo
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2018-02-02
gmungoc
Merge branch 'feature/JAL-984splitAdjuster' into features...
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2018-02-02
gmungoc
JAL-2899 asynchronous Jmol colour updates
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2018-02-02
gmungoc
JAL-984 use cursor for drag regions to adjust annotation...
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2018-02-02
gmungoc
JAL-984 better behaved panel height adjuster
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2018-02-01
gmungoc
JAL-2899 update structure and overview on slider drag...
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2018-01-31
gmungoc
JAL-2792 added tooltip to menu items in case of truncation
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2018-01-30
gmungoc
JAL-2069 menu item now "Variable colour..." to hint...
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2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
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2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
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2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
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2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
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2018-01-29
gmungoc
Merge branch 'feature/JAL-2759' of https://source.jalview...
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2018-01-29
gmungoc
JAL-1270 testPadGaps() added
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2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressions...
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2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
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2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
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2018-01-18
gmungoc
JAL-2830 removed toUpperCase() from edited dataset...
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2018-01-18
gmungoc
JAL-2541 removed redundant test flag
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2018-01-18
gmungoc
JAL-2541 cutWithFeatures_exhaustive test including...
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2018-01-17
gmungoc
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
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2018-01-12
gmungoc
JAL-2864 more generous wait for gc() to complete in...
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2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
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2018-01-09
gmungoc
JAL-2843 test roundtrip of feature colours and filters...
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2018-01-09
gmungoc
JAL-2843 unit tests for writing filters to Jalview...
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2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
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2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
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2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
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2018-01-08
gmungoc
JAL-2864 OverviewCanvas.dispose() for applet
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2018-01-08
gmungoc
JAL-2864 null OverviewDimensions on dispose + unit...
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2017-12-14
gmungoc
JAL-2843 missed Castor class
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2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
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2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
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2017-12-14
gmungoc
JAL-2843 missed Castor class
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2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
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2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
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2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
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2017-12-11
gmungoc
JAL-2843 add colour by attribute, and no value colour...
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2017-12-08
gmungoc
JAL-2843 example filters added
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2017-12-08
gmungoc
JAL-2843 read/write feature filters from/to Jalview...
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2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
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2017-12-08
gmungoc
JAL-2843 methods relocated
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2017-12-08
gmungoc
JAL-2843 toStableString, fromString for Jalview features...
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2017-12-08
gmungoc
JAL-2843 FeatureRenderer.getFeatureFilters returns...
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2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-12-04
gmungoc
JAL-2808 JAL-2850 update spike build to latest
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2017-12-04
gmungoc
Merge branch 'spikes/mungo' into features/JAL-1793VCF
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2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence referenced...
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2017-12-04
gmungoc
JAL-2845 locate reverse strand insertion as complement...
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2017-12-04
gmungoc
JAL-2835 small refactor to only extract transcript...
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2017-12-01
gmungoc
JAL-2835 spike updated to latest (use specific SO term...
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2017-12-01
gmungoc
JAL-2835 refactored to extract specific consequence...
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2017-12-01
gmungoc
JAL-2792 sort feature attributes for output, not for...
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