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2011-05-05	jprocter	added simple stdout debug function	commit \| commitdiff \| tree
2011-04-25	jprocter	JAL-824 - additional methods to allow jmol colouring...	commit \| commitdiff \| tree
2011-04-25	jprocter	JAL-824 - patch to schema to allow jmol colouring state...	commit \| commitdiff \| tree
2011-04-25	jprocter	toggle of inclusion/exclusion of views for colouring...	commit \| commitdiff \| tree
2011-04-25	jprocter	JAL-824 - ensure Jmol colouring is a radio button	commit \| commitdiff \| tree
2011-04-25	jprocter	documentation for JAL-824 and JAL-621	commit \| commitdiff \| tree
2011-04-25	jprocter	documentation for JAL-732	commit \| commitdiff \| tree
2011-04-25	jprocter	htmlfix	commit \| commitdiff \| tree
2011-04-22	jprocter	formatting	commit \| commitdiff \| tree
2011-04-22	jprocter	removed useless flag (was always null for button press...	commit \| commitdiff \| tree
2011-04-22	jprocter	JAL-823 and JAL-824 - seqColour no longer the default...	commit \| commitdiff \| tree
2011-04-22	jprocter	comments re JAL-823 legacy issue	commit \| commitdiff \| tree
2011-04-22	jprocter	clarify tooltip	commit \| commitdiff \| tree
2011-04-22	jprocter	moved loadingFromArchive flag modification to after...	commit \| commitdiff \| tree
2011-04-22	jprocter	option for enabling Jmol colouring mode JAL-824	commit \| commitdiff \| tree
2011-04-21	jprocter	JAL-641 patch	commit \| commitdiff \| tree
2011-04-21	jprocter	patch for JAL-733	commit \| commitdiff \| tree
2011-04-21	jprocter	patch for JAL-820 and JAL-821	commit \| commitdiff \| tree
2011-04-21	jprocter	separated alignment annotation height calculation from...	commit \| commitdiff \| tree
2011-04-21	jprocter	moved to same place as in jalview.gui	commit \| commitdiff \| tree
2011-04-21	jprocter	save and recover graph height, visibility and row position...	commit \| commitdiff \| tree
2011-04-21	jprocter	allow an alignment annotation row to be removed and...	commit \| commitdiff \| tree
2011-04-21	jprocter	allow an existing alignment annotation row to be bound...	commit \| commitdiff \| tree
2011-04-21	jprocter	added graphHeight attribute to schema (JAL-784)	commit \| commitdiff \| tree
2011-04-19	jprocter	avoid race condition when featureRenderer for structure...	commit \| commitdiff \| tree
2011-04-19	jprocter	patched XML parser to ensure it properly escapes non...	commit \| commitdiff \| tree
2011-04-08	jprocter	todo	commit \| commitdiff \| tree
2011-04-08	jprocter	imported properties via -props should never be overwritten	commit \| commitdiff \| tree
2011-04-08	jprocter	allow groovy scripts to be run when in headless mode...	commit \| commitdiff \| tree
2011-04-07	jprocter	allow groovy scripts to be run when in headless mode...	commit \| commitdiff \| tree
2011-04-07	jprocter	allow groovy scripts to be run when in headless mode...	commit \| commitdiff \| tree
2011-04-07	jprocter	resolves JAL-805	commit \| commitdiff \| tree
2011-04-07	jprocter	resolves JAL-804	commit \| commitdiff \| tree
2011-02-28	jprocter	excess imports	commit \| commitdiff \| tree
2011-02-27	jprocter	patch for JAL-780	commit \| commitdiff \| tree
2011-02-27	jprocter	patch for occasional ArrayIndexOutOfBounds	commit \| commitdiff \| tree
2011-02-27	jprocter	patch for JAL-792	commit \| commitdiff \| tree
2011-02-27	jprocter	first patch for JAL-774 - ensure end is a valid bound...	commit \| commitdiff \| tree
2011-02-25	jprocter	first approximation for JAL-782 - hint that opaque...	commit \| commitdiff \| tree
2011-02-18	jprocter	JAL-777/JAL-641 debugging	commit \| commitdiff \| tree
2011-02-18	jprocter	new alignmentPanel api + JAL-777/JAL-641 debugging	commit \| commitdiff \| tree
2011-02-18	jprocter	fix scrolltoposition behaviour and new alignmentPanel api	commit \| commitdiff \| tree
2011-02-18	jprocter	fix scrolltoposition behaviour	commit \| commitdiff \| tree
2011-02-18	jprocter	JAL-574	commit \| commitdiff \| tree
2011-02-18	jprocter	convenience method to discover all Jmols	commit \| commitdiff \| tree
2011-02-18	jprocter	JAL-779 and some redraw refinements	commit \| commitdiff \| tree
2011-02-18	jprocter	JAl-574	commit \| commitdiff \| tree
2011-02-18	jprocter	avoid exceptions for orphaned windows	commit \| commitdiff \| tree
2011-02-18	jprocter	bugfixing for JAL-778	commit \| commitdiff \| tree
2011-02-18	jprocter	new multiple multiple view associations JAL-777	commit \| commitdiff \| tree
2011-02-18	jprocter	call to release any explicit event handler references...	commit \| commitdiff \| tree
2011-02-18	jprocter	dynamic alignmentPanel menu class	commit \| commitdiff \| tree
2011-02-18	jprocter	call to release any explicit event handler references	commit \| commitdiff \| tree
2011-02-18	jprocter	removed explicit 'linkedAlignmentPanel' flag	commit \| commitdiff \| tree
2011-02-18	jprocter	fix for occasional race conditions	commit \| commitdiff \| tree
2011-02-17	jprocter	fixes JAL-778 - flag to indicate binding between an...	commit \| commitdiff \| tree
2011-02-17	jprocter	protype api	commit \| commitdiff \| tree
2011-02-17	jprocter	classCast exception - attempting to update registry...	commit \| commitdiff \| tree
2011-02-15	jprocter	fix for JAL-776	commit \| commitdiff \| tree
2011-02-15	jprocter	fixes JAL-775	commit \| commitdiff \| tree
2011-02-14	jprocter	JAL-769	commit \| commitdiff \| tree
2011-02-14	jprocter	JAL-564 (annotation panel height adjustment) and alignment...	commit \| commitdiff \| tree
2011-02-14	jprocter	JAL-621 (mouseover debugging) and JAL-564 (annotation...	commit \| commitdiff \| tree
2011-02-14	jprocter	JAL-621 and JAL-564	commit \| commitdiff \| tree
2011-02-14	jprocter	JAL-621 - also renamed list of javascript handlers	commit \| commitdiff \| tree
2011-02-14	jprocter	refactored annotation panel height calculation	commit \| commitdiff \| tree
2011-02-14	jprocter	JAL-621 - also renamed list of javascript handlers	commit \| commitdiff \| tree
2011-02-14	jprocter	javadoc	commit \| commitdiff \| tree
2011-02-04	jprocter	Balascz reported problems - jalview tries to write...	commit \| commitdiff \| tree
2011-02-04	jprocter	JAL-761	commit \| commitdiff \| tree
2011-02-04	jprocter	1.2ish awt methods	commit \| commitdiff \| tree
2011-02-04	jprocter	java 1.4.2 applet build	commit \| commitdiff \| tree
2011-02-04	jprocter	1.2ish awt methods and excluding unused code	commit \| commitdiff \| tree
2011-02-04	jprocter	don't need to retrieve idwidthadjuster	commit \| commitdiff \| tree
2011-02-04	jprocter	javadoc	commit \| commitdiff \| tree
2011-02-04	jprocter	patch for JAL-760	commit \| commitdiff \| tree
2011-02-04	jprocter	group associated annotation and logos JAL-516 JAL-759	commit \| commitdiff \| tree
2011-02-04	jprocter	adjustable annotation panel height and vertical scrollbar...	commit \| commitdiff \| tree
2011-02-01	jprocter	fixes JAL-757	commit \| commitdiff \| tree
2011-01-21	jprocter	extended mouseover message with absolute sequence position...	commit \| commitdiff \| tree
2011-01-21	jprocter	search result highlighting and scrolling and some patches...	commit \| commitdiff \| tree
2011-01-21	jprocter	more efficient highlighting and selection display JAL-469	commit \| commitdiff \| tree
2011-01-21	jprocter	more efficient highlighting and selection display	commit \| commitdiff \| tree
2011-01-21	jprocter	logic bug for auto scrolling	commit \| commitdiff \| tree
2011-01-21	jprocter	relaxed ID matching parameter JAL-753 and sortBy JAL-754	commit \| commitdiff \| tree
2011-01-21	jprocter	relaxed ID matching parameter JAL-753	commit \| commitdiff \| tree
2011-01-21	jprocter	ensure source is rarely null	commit \| commitdiff \| tree
2011-01-21	jprocter	extended mouseover message with absolute sequence position...	commit \| commitdiff \| tree
2011-01-18	jprocter	patch for JAL-695 - need to test if this is observed...	commit \| commitdiff \| tree
2011-01-18	jprocter	patch for JAL-695	commit \| commitdiff \| tree
2011-01-18	jprocter	javadoc	commit \| commitdiff \| tree
2011-01-18	jprocter	javadoc	commit \| commitdiff \| tree
2011-01-18	jprocter	avoid creating lots of identical search results. patch...	commit \| commitdiff \| tree
2011-01-18	jprocter	removed securityException caused by accessing class...	commit \| commitdiff \| tree
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	commit \| commitdiff \| tree
2011-01-17	jprocter	additional test - http://www.koders.com/java/fid4C9593FE80CE...	commit \| commitdiff \| tree
2011-01-17	jprocter	warn user that no JS callbacks will work by default...	commit \| commitdiff \| tree
2011-01-17	jprocter	need to own lock to notify	commit \| commitdiff \| tree
2011-01-17	jprocter	need to own lock to notify	commit \| commitdiff \| tree
2011-01-17	jprocter	avoid 1.5 specific methods	commit \| commitdiff \| tree
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