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2018-11-05	gmungoc	JAL-3148 pull up getSequenceRenderer to AlignmentViewPanel	commit \| commitdiff \| tree
2018-11-05	gmungoc	JAL-3148 add all options to colour menu	commit \| commitdiff \| tree
2018-09-20	gmungoc	JAL-2843 tweaks to help text for filters	commit \| commitdiff \| tree
2018-09-20	gmungoc	JAL-2843 help text for colour by attribute, feature...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-3120 preserve plain colour value when changing...	commit \| commitdiff \| tree
2018-09-19	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-19	gmungoc	JAL-2808 JAL-3032 drop tabbed layout for Colours and...	commit \| commitdiff \| tree
2018-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-12	gmungoc	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2018-09-12	gmungoc	JAL-1551 reinstated Save actions	commit \| commitdiff \| tree
2018-09-03	gmungoc	Merge branch 'trialMerge' into releases/Release_2_10_5_Branch	commit \| commitdiff \| tree
2018-09-03	gmungoc	JAL-3076 fetch Ensembl sequence as JSON instead of...	commit \| commitdiff \| tree
2018-08-31	gmungoc	JAL-3003 remove redundant call to drawSelectionGroup	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3059 use correct border colour for groups	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3003 draw selection group outline on main graphics...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 comment to clarify wrapped print algorithm	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 print/export wrapped uses common code to draw...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-3087 include full alignment height in repeating...	commit \| commitdiff \| tree
2018-08-28	gmungoc	JAL-247 draw/print sequence ids now uses common code...	commit \| commitdiff \| tree
2018-08-15	gmungoc	JAL-3080 remove tree partition if no groups created	commit \| commitdiff \| tree
2018-08-14	gmungoc	JAL-3078 reset Tree font (only!) on Cancel	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3018 updated to Ensembl REST 7.0	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3076 refactor for more efficient scan of 'gene...	commit \| commitdiff \| tree
2018-08-10	gmungoc	JAL-3076 fetch Ensembl sequence as JSON instead of...	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2755 correct Javadoc and error handling	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2920 format/comment tidy	commit \| commitdiff \| tree
2018-06-07	gmungoc	JAL-2920 wrap description in <html/> if it includes...	commit \| commitdiff \| tree
2018-06-07	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' of https...	commit \| commitdiff \| tree
2018-06-06	gmungoc	JAL-2920 unit tests for 3 or more original or variant...	commit \| commitdiff \| tree
2018-06-06	gmungoc	JAL-3013 ensure Chimera as a symlink gets resolved	commit \| commitdiff \| tree
2018-06-04	gmungoc	JAL-2808 update test for revised treatment of 'mixed...	commit \| commitdiff \| tree
2018-06-04	gmungoc	JAL-3019 correctly form toRange of 'traversed' MapList	commit \| commitdiff \| tree
2018-06-04	gmungoc	JAL-3018 updated REST versions to 6.3	commit \| commitdiff \| tree
2018-05-31	gmungoc	JAL-2808 don't capture or report min-max for mixed...	commit \| commitdiff \| tree
2018-05-31	gmungoc	JAL-2808 pre-fill numeric inequality filter with min...	commit \| commitdiff \| tree
2018-05-28	gmungoc	Merge branch 'bug/JAL-797' into develop	commit \| commitdiff \| tree
2018-05-28	gmungoc	Merge remote-tracking branch 'origin/releases/Release_2_10_4...	commit \| commitdiff \| tree
2018-05-25	gmungoc	JAL-2992 simpler heuristic for available height	commit \| commitdiff \| tree
2018-05-25	gmungoc	JAL-2995 tooltip on fields with double-click to browse...	commit \| commitdiff \| tree
2018-05-25	gmungoc	JAL-2994 temporary patch with paths to Chimera for...	commit \| commitdiff \| tree
2018-05-24	gmungoc	JAL-2997 additional tests	commit \| commitdiff \| tree
2018-05-23	gmungoc	JAL-2993 AlignFrame listen for keystrokes in OverviewPanel	commit \| commitdiff \| tree
2018-05-23	gmungoc	JAL-2997 unit test	commit \| commitdiff \| tree
2018-05-23	gmungoc	JAL-2997 handle tab-delimited trailing column number...	commit \| commitdiff \| tree
2018-05-21	gmungoc	JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW	commit \| commitdiff \| tree
2018-05-21	gmungoc	JAL-2920 use HGVS notation for protein variant feature	commit \| commitdiff \| tree
2018-05-11	gmungoc	JAL-2986 corrected findIndex for out of range residue...	commit \| commitdiff \| tree
2018-05-11	gmungoc	JAL-2986 additional asserts for SequenceCursor updates	commit \| commitdiff \| tree
2018-05-11	gmungoc	JAL-2986 failing test added	commit \| commitdiff \| tree
2018-05-09	gmungoc	JAL-2984 add pdb as sequence(s) if associate structure...	commit \| commitdiff \| tree
2018-05-07	gmungoc	JAL-2808 ensure test setUp/tearDown alwaysRun	commit \| commitdiff \| tree
2018-05-07	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' into...	commit \| commitdiff \| tree
2018-05-04	gmungoc	JAL-2906 small tweaks to release notes	commit \| commitdiff \| tree
2018-04-24	gmungoc	JAL-2959 no Print dialog shown if Page Format is Cancelled	commit \| commitdiff \| tree
2018-04-23	gmungoc	JAL-2954 more efficient SearchResults.markColumns	commit \| commitdiff \| tree
2018-04-23	gmungoc	JAL-2952 set negative TempFactor values as AlignmentAnnotati...	commit \| commitdiff \| tree
2018-04-18	gmungoc	Merge branch 'releases/Release_2_10_4_Branch' into...	commit \| commitdiff \| tree
2018-04-18	gmungoc	JAL-2593 render 'duplicate' features if transparency...	commit \| commitdiff \| tree
2018-04-13	gmungoc	Merge branch 'features/JAL-2944_openStructuresInSelectedView...	commit \| commitdiff \| tree
2018-04-12	gmungoc	JAL-2223 don't add duplicate mappings to StructureSelectionM...	commit \| commitdiff \| tree
2018-04-12	gmungoc	JAL-1847 minor post-review updates	commit \| commitdiff \| tree
2018-04-12	gmungoc	JAL-2944 tidies for review comments	commit \| commitdiff \| tree
2018-03-22	gmungoc	JAL-2929 unit test, tidy unused/unneeded fields/parameters	commit \| commitdiff \| tree
2018-03-21	gmungoc	JAL-2929 use configure Overview gap colour instead...	commit \| commitdiff \| tree
2018-03-21	gmungoc	JAL-2754 renamed proguard.jar to include version number	commit \| commitdiff \| tree
2018-03-21	gmungoc	JAL-2754 5.3.3 update of proguard.jar	commit \| commitdiff \| tree
2018-03-21	gmungoc	JAL-2754 update to specify Java 1.8(+)	commit \| commitdiff \| tree
2018-03-21	gmungoc	JAL-2754 update to Java 1.8	commit \| commitdiff \| tree
2018-03-16	gmungoc	JAL-2679 getGeneId() now uses the same pattern as getGeneLoc...	commit \| commitdiff \| tree
2018-03-16	gmungoc	Merge remote-tracking branch 'origin/releases/Release_2_10_4...	commit \| commitdiff \| tree
2018-03-16	gmungoc	JAL-2922 update FeatureRenderer and repaint feature...	commit \| commitdiff \| tree
2018-03-16	gmungoc	Merge branch 'bug/JAL-2865removeGC' into develop	commit \| commitdiff \| tree
2018-03-15	gmungoc	JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES	commit \| commitdiff \| tree
2018-03-14	gmungoc	JAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...	commit \| commitdiff \| tree
2018-03-14	gmungoc	JAL-2679 reinstating changes lost in VCF merge	commit \| commitdiff \| tree
2018-03-14	gmungoc	JAL-2679 reinstating changes lost in VCF merge	commit \| commitdiff \| tree
2018-03-13	gmungoc	JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)	commit \| commitdiff \| tree
2018-03-08	gmungoc	Merge remote-tracking branch 'origin/releases/Release_2_10_4...	commit \| commitdiff \| tree
2018-03-08	gmungoc	JAL-2885 tests updated for code changes	commit \| commitdiff \| tree
2018-03-08	gmungoc	JAL-2930 use MouseWheelEvent.getPreciseWheelRotation...	commit \| commitdiff \| tree
2018-03-07	gmungoc	Merge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch	commit \| commitdiff \| tree
2018-03-07	gmungoc	JAL-2922 [2] not [1] for Boolean column of table	commit \| commitdiff \| tree
2018-03-07	gmungoc	Merge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch	commit \| commitdiff \| tree
2018-03-07	gmungoc	JAL-2922 i18n and bespoke handler for Invert Selection	commit \| commitdiff \| tree
2018-03-07	gmungoc	Merge branch 'bug/JAL-2924nullTooltip' into releases...	commit \| commitdiff \| tree
2018-03-07	gmungoc	JAL-2926 fix copy group consensus (and paste sequence...	commit \| commitdiff \| tree
2018-03-07	gmungoc	JAL-2925 handle empty annotation when copying group...	commit \| commitdiff \| tree
2018-03-07	gmungoc	JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...	commit \| commitdiff \| tree
2018-02-28	gmungoc	JAL-2924 no tooltip over null annotation positions	commit \| commitdiff \| tree
2018-02-20	gmungoc	JAL-2897 updated unit test for code change	commit \| commitdiff \| tree
2018-02-20	gmungoc	Merge branch 'develop' into features/JAL-1793VCF	commit \| commitdiff \| tree
2018-02-09	gmungoc	JAL-2789 avoid using transcript (with no UTR) as CDS...	commit \| commitdiff \| tree
2018-02-09	gmungoc	JAL-2789 code format changes only (before functional...	commit \| commitdiff \| tree
2018-02-09	gmungoc	JAL-2666 fix failure to scroll split alignment of height 1	commit \| commitdiff \| tree
2018-02-08	gmungoc	JAL-2666 basic initial fix for split screen scroll bug	commit \| commitdiff \| tree
2018-02-07	gmungoc	JAL-2808 ensure pattern field re-enabled when needed...	commit \| commitdiff \| tree
2018-02-05	gmungoc	JAL-2897 more informative description on synonymous...	commit \| commitdiff \| tree
2018-02-05	gmungoc	JAL-2897 more informative description on synonymous...	commit \| commitdiff \| tree
2018-02-05	gmungoc	Merge branch 'spikes/mungo' into trialMerge	commit \| commitdiff \| tree
2018-02-05	gmungoc	JAL-2897 more informative description on synonymous...	commit \| commitdiff \| tree
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