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JAL-957 reinstate the PDBfile parameter
2014-01-28
Jim Procter
JAL-957 reinstate the PDBfile parameter
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2014-01-28
Jim Procter
JAL-1400 sign the jnlp for arbitrary memory
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2014-01-28
Jim Procter
JAL-957 JAL-1400 only sign specific jar artefacts for...
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2014-01-28
Jim Procter
JAL-957 neater boilerplate link to signed/unsigned...
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2014-01-28
Jim Procter
JAL-957 shorten title for linked applets example
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2014-01-28
Jim Procter
JAL-957 removed cruft on appletParameters page
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2014-01-28
Jim Procter
JAL-957 make a copy of the applet/Jmol applet jars...
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2014-01-28
Jim Procter
Merge branch 'JAL-1400_sandboxapp' into JAL-957_jbake
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2014-01-28
Jim Procter
JAL-957 permissions property for example pages (jbake...
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2014-01-28
Jim Procter
JAL-957 unsigned applet demo pages created with jbake
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2014-01-28
Jim Procter
JAL-957 tidier source and ensure permissions is explicitly...
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2014-01-28
Jim Procter
JAL-957 new jbake-generated example pages
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2014-01-28
Jim Procter
JAL-957 instructions on runnning Jbake to regenerate...
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2014-01-28
Jim Procter
JAL-957 standardise formatting for example preamble
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2014-01-28
Jim Procter
JAL-957 standard link to signed/unsigned demo pages...
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2014-01-28
Jim Procter
JAL-957 tidy jbake directory
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2014-01-17
Jim Procter
JAL-957 first attempt to build examples with jbake
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2014-01-14
Jim Procter
Merge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch
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2014-01-14
Jim Procter
JAL-1400 specify minimum 1.6 JRE
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2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into Release_2_8_Branch
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2014-01-13
Jim Procter
JAL-1422 update any existing configuration to replace...
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2014-01-13
Jim Procter
JAL-1422 change default link to EMBL-EBI Search
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2014-01-13
Jim Procter
JAL-1422 remove SRS and expasy links and replace with...
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2014-01-07
Jim Procter
Merge branch 'fix_JAL-1423' into Release_2_8_Branch
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2014-01-07
Jim Procter
JAL-1423 - console error reporting and graceful handling...
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
JAL-1400 update manifest in the JmolApplet jar
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
JAL-1400 disable 'Permissions' in manifest to see if...
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
sandbox permissions
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2013-11-26
Jim Procter
new required parameter for deploying the applet
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
JAL-1400 add codebase and caller allowable codebase
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 specified SHA1WithRSA for sig algorithm and...
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2013-11-25
Jim Procter
adivce from http://ant.apache.org/manual/Tasks/signjar...
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 need to explicitly specify SHA1 for java 6...
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 supress dependency warnings from proguard
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 latest version of proguard needed for Java...
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2013-11-07
Jim Procter
Merge branch 'JAL-1286' into Release_2_8_Branch
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2013-11-07
Jim Procter
JAL-1286 additional tests to ensure that non-GZ files...
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2013-11-07
Jim Procter
JAL-1286 check if local file ends with .gz and opens...
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2013-11-07
Jim Procter
JAL-1286 test input of gzip stream from local file
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2013-11-05
Jim Procter
JAL-1400 found a fix for the sandbox exception - need...
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2013-11-05
Jim Procter
experiment with reinstating the sandbox permissions
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2013-11-05
Jim Procter
JAL-1400 try putting explicit domain for jalviewLite...
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2013-11-05
Jim Procter
JAL-1400 Always create indices for jar before signing
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2013-11-05
Jim Procter
JAL-1400 sign everything !
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2013-11-05
Jim Procter
JAL-1400 explicit security settings for applet
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2013-11-05
Jim Procter
JAL-1400 explicit security permissions for Desktop
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2013-10-11
Jim Procter
Merge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11
Jim Procter
JAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11
Jim Procter
JAL-1164 scope bySequence analysis methods to start...
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2013-10-11
Jim Procter
JAL-1114 javadoc
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2013-10-11
Jim Procter
JAL-1114 promote start/end attributes to gettable fields...
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2013-10-11
Jim Procter
JAL-1114 API javadoc
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2013-10-11
Jim Procter
JAL-1164 only predict on currently selected sequences...
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2013-10-11
Jim Procter
JAL-1385 expose core view model methods in interface
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2013-07-12
Jim Procter
Merge branch 'JAL-1347' into Release_2_8_Branch
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2013-07-12
Jim Procter
JAL-1347 RNA Structure consensus follows the alignment...
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2013-07-12
Jim Procter
JAL-1347 flow control for display of profile data is...
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2013-07-11
Jim Procter
Merge branch 'JAL-1347' into Release_2_8_Branch
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2013-07-11
Jim Procter
JAL-1347 identify and set rendering settings for consensus...
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2013-07-11
Jim Procter
JAL-1347 refactor logic for setting display flags for...
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2013-07-11
Jim Procter
JAL-1347 make it efficient to call getConsensus to...
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2013-07-08
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_Branch
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2013-07-08
Jim Procter
make sure 'example alignment' can be found in documentation
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2013-07-07
Jim Procter
Merge branch 'structures/JAL-1016' into Release_2_8_Branch
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2013-07-07
Jim Procter
JAL-1345 - set nSeconds arg for http://chemapps.stolaf...
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2013-07-07
Jim Procter
JAL-1016 Instruct user to report situations where the...
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2013-07-07
Jim Procter
JAL-1332 make SSM context discovery safer (particularly...
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2013-07-07
Jim Procter
JAL-583 refactor todo about separating code to construct...
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2013-07-07
Jim Procter
fix for JAL-1016 - wait around until we have a complete...
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2013-07-07
Jim Procter
JAL-1016 - do our assertions immediatly
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2013-06-23
Jim Procter
Merge branch 'bug/JAL-1230' into Release_2_8_Branch
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2013-06-23
Jim Procter
JAL-1230 update alignment state for annotation edits...
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2013-06-23
Jim Procter
JAL-1230 proxy method for synchronising internal AlignmentI...
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2013-06-23
Jim Procter
JAL-1230 simplify initialisation of consensus, conservation...
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2013-06-23
Jim Procter
Merge branch 'bug/JAL-1230' into Release_2_8_Branch
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2013-06-23
Jim Procter
Merge commit '72c628b' into Release_2_8_Branch
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2013-06-22
Jim Procter
Merge branch 'feature/JAL-1330' into Release_2_8_Branch
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2013-06-22
Jim Procter
JAL-1330 pick primary seqeunce data source for authority...
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2013-06-21
Jim Procter
JAL-1230 comment unused code to avoid NPE
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2013-06-21
Jim Procter
JAL-1327 TODO
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2013-06-21
Jim Procter
JAL-1326 JAL-1327 update all graphline thresholds with...
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2013-06-21
Jim Procter
JAL-1241 - generate colour for all annotation values...
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2013-06-21
Jim Procter
Merge branch 'JAL-1294_iupredexportimport' into Release_2_8_...
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2013-06-21
Jim Procter
JAL-1325 formatting
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2013-06-21
Jim Procter
JAL-1325 JAL-1294 resolve SEQUENCE_REF and GROUP_REF...
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2013-06-21
Jim Procter
JAL-1294 JAL-1325 store graphline for individual annotation...
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2013-06-21
Jim Procter
JAL-1294 JAL-1325 bugfix equals
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2013-06-21
Jim Procter
JAL-1294 JAL-1325 test annotation threshold line equivalence
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2013-06-21
Jim Procter
Merge branch 'JAL-1321_jws2_tooltips' into Release_2_8_Branch
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2013-06-21
Jim Procter
JAL-1127 set option widgets to service defaults only...
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2013-06-19
Jim Procter
JAL-1240 avoid NPE when source has no proxy available
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2013-06-19
Jim Procter
Merge branch 'JAL-1321_jws2_tooltips' into Release_2_8_Branch
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