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2005-02-10	amwaterhouse	Cut and paste implemented	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	check that we're not off the end of a sequence	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	check that mouse is over sequence if unaligned	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	edit sequence name method	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	remove try catch loop	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	isAligned method added, check before making tree	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	isAligned method added	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	removed	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Start the thread	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Display tooltip updated	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Correct number of ids is drawn	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Fixed display bugs when feature is off the screen	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Blasts asynchronously	commit \| commitdiff \| tree
2005-02-08	amwaterhouse	Set property returns key	commit \| commitdiff \| tree
2005-02-08	amwaterhouse	Looks for missing ids using BlastClient	commit \| commitdiff \| tree
2005-02-08	amwaterhouse	new class	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Properties bug fixed	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	New class	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Use Cache.getProperty	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Settooltip for sequence feature	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	load properties on startup	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Properties added	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Now displays sequence features	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	New class for fetching sequence features	commit \| commitdiff \| tree
2005-02-04	amwaterhouse	SequenceFeature display added	commit \| commitdiff \| tree
2005-02-02	amwaterhouse	Modified for wrapAlignement	commit \| commitdiff \| tree
2005-02-02	amwaterhouse	Remove test image	commit \| commitdiff \| tree
2005-02-02	amwaterhouse	Modified for wrappingAlignment	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Apply to all groups method added	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Update PID or conservationSlider if necessary	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Bugs in column selection fixed	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Conservation and PID colouring methods updated, also...	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Conservation and PID colouring methods updated	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Secondary panel is hidden for the moment	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Enable wrap menu item	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Ability to apply to all groups added	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	No need for drawableSequence	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Clustal colours now work	commit \| commitdiff \| tree
2005-01-28	amwaterhouse	New layout, works 1.4 and 1.5	commit \| commitdiff \| tree
2005-01-27	amwaterhouse	correct border width	commit \| commitdiff \| tree
2005-01-27	amwaterhouse	JavaHelp files added	commit \| commitdiff \| tree
2005-01-27	amwaterhouse	ColourSchemeKey now in documentation	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	system.exit or destroy if applet or app	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	change order of menuitems	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	don't system.ext	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	now has key listener	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	clustalColour bug fixed, clear selection	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	extends Applet	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	Adds regex.jar to classpath	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	warning! this is obfuscated	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	bug in compare fixed	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	returns color.white if the underlying colourscheme...	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	creates new groups when selecting branches of the tree	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	now uses 1.1 friendly regex	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	Clear selection when deleting all groups	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	Allow removal of colour when deleting groups	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	remove a few imports	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Nucleotide colours added	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	New colourScheme	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Create group from search added	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Delete groups added, nucleotide color added	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	ForegroundColor is darker.darker.darker	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	if stretchGroup is null, set avRubberbandGroup new...	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	<= y2 is now < y2	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Commented out code removed	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Fill rect white	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Check if graphics is null in labelSize	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	False changed to true	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	SuperGroup added	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	System.out removed	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	SuperGroups added	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	new images	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	Clustal align DNA spinner added	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	Fix overviewPanel bugs	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	RefreshPanels after a colour change	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	Dont use addToDesktop for splashscreen	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	ClustalX added to ColourProperties	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	SetSecondaryPanel	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	SetSecondaryPanel visible	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	Works out exisiting colur of a group	commit \| commitdiff \| tree
2005-01-17	amwaterhouse	New class	commit \| commitdiff \| tree
2005-01-14	amwaterhouse	Spaces	commit \| commitdiff \| tree
2005-01-14	amwaterhouse	Various color bugs sorted out	commit \| commitdiff \| tree
2005-01-14	amwaterhouse	Dispalys rule along top of output	commit \| commitdiff \| tree
2005-01-14	amwaterhouse	Hscrollbar is shortened	commit \| commitdiff \| tree
2005-01-14	amwaterhouse	Return color.white if a gap char is detected	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	getValue method added	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	Maintain PID or conservation status when changing colour	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	SequenceGroup is now an array	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	Send array of groups to renderer	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	Initial selection bug fixed	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	FindAllGroups added	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	Scrollbar at bottom of screen	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	GetResidueBoxColour altered for faster rendering	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	Renderer already has graphics context	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	getResidueBoxColour has been removed for faster rendering	commit \| commitdiff \| tree
2005-01-13	amwaterhouse	Ignores gaps when searching	commit \| commitdiff \| tree
2005-01-12	amwaterhouse	Group editing is done by control and alt key down	commit \| commitdiff \| tree
2005-01-12	amwaterhouse	regular expression added	commit \| commitdiff \| tree
2005-01-12	amwaterhouse	delete gaps bug fixed	commit \| commitdiff \| tree
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