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2017-05-25	kiramt	Merge branch 'bug/JAL-2551' into bug/JAL-2034contextchange	commit \| commitdiff \| tree
2017-05-24	kiramt	JAL-2551 Fix to group colouring when group extent is...	commit \| commitdiff \| tree
2017-05-24	kiramt	JAL-2034 Added isDefined flag to SequenceGroup	commit \| commitdiff \| tree
2017-05-22	kiramt	Merge remote-tracking branch 'origin/bug/JAL-2256'...	commit \| commitdiff \| tree
2017-05-18	kiramt	JAL-2256 Corrected AllCols/Rows iterator behaviour...	commit \| commitdiff \| tree
2017-05-16	kiramt	JAL-2522 Missed fix to applet	commit \| commitdiff \| tree
2017-05-16	kiramt	JAL-2388 Rationalised hashCode method in HiddenColumns	commit \| commitdiff \| tree
2017-05-15	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-15	kiramt	JAL-2388 Add missed optimisation	commit \| commitdiff \| tree
2017-05-10	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-05-10	kiramt	JAL-2522 Fix to cursor scrolling	commit \| commitdiff \| tree
2017-05-09	kiramt	JAL-2388 Added checkbox to toggle hidden columns menu...	commit \| commitdiff \| tree
2017-05-08	kiramt	JAL-2515 Id panel in applet updated for NPE on urlProvider	commit \| commitdiff \| tree
2017-05-08	kiramt	JAL-2512 And corresponding test	commit \| commitdiff \| tree
2017-05-08	kiramt	JAL-2512 And applet	commit \| commitdiff \| tree
2017-05-08	kiramt	JAL-2512 Fix to show non-gap positions in None colour...	commit \| commitdiff \| tree
2017-05-05	kiramt	Merge remote-tracking branch	commit \| commitdiff \| tree
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	commit \| commitdiff \| tree
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into	commit \| commitdiff \| tree
2017-04-26	kiramt	Merge remote-tracking branch 'origin/features/JAL-2388hidden...	commit \| commitdiff \| tree
2017-04-26	kiramt	JAL-2388 Update to hidden columns/column selection...	commit \| commitdiff \| tree
2017-04-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-04-26	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-04-26	kiramt	Merge remote-tracking branch 'origin/features/JAL-2388hidden...	commit \| commitdiff \| tree
2017-04-26	kiramt	JAL-2388 last separation of hidden columns/col selection	commit \| commitdiff \| tree
2017-04-26	kiramt	JAL-2388 Tidies and unit tests	commit \| commitdiff \| tree
2017-04-25	kiramt	JAL-2388 Missed file from previous commit	commit \| commitdiff \| tree
2017-04-25	kiramt	JAL-2388 Reverted and re-did applet changes	commit \| commitdiff \| tree
2017-04-25	kiramt	JAL-2388 Tidies and other corrections so applet compiles	commit \| commitdiff \| tree
2017-04-25	kiramt	JAL-2388 And corrected OverviewCanvas for applet	commit \| commitdiff \| tree
2017-04-25	kiramt	JAL-2388 Updated applet to show/hide hidden regions...	commit \| commitdiff \| tree
2017-04-25	kiramt	JAL-2388 Working hidden regions hide/show in desktop	commit \| commitdiff \| tree
2017-04-24	kiramt	Merge remote-tracking branch	commit \| commitdiff \| tree
2017-04-24	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-04-24	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-04-24	kiramt	JAL-2388 Finished split of hidden columns and selected...	commit \| commitdiff \| tree
2017-04-24	kiramt	JAL-2439 Fixed opposite out-by-one problem in wrapped...	commit \| commitdiff \| tree
2017-04-24	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-04-24	kiramt	JAL-2439 Fix to hidden column marker being one row...	commit \| commitdiff \| tree
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	commit \| commitdiff \| tree
2017-04-21	kiramt	JAL-2388 Tidies	commit \| commitdiff \| tree
2017-04-21	kiramt	JAL-2388 Make sure resizing still works	commit \| commitdiff \| tree
2017-04-21	kiramt	JAL-2388 Alignment col and row collections with iterators	commit \| commitdiff \| tree
2017-04-19	kiramt	Merge remote-tracking branch 'origin/develop' into	commit \| commitdiff \| tree
2017-04-11	kiramt	JAL-2479 Moved some network-dependent unit tests into...	commit \| commitdiff \| tree
2017-03-29	kiramt	JAL-2388 New rendering code, extensions to support...	commit \| commitdiff \| tree
2017-03-29	kiramt	JAL-2388 New iterators and tests	commit \| commitdiff \| tree
2017-03-24	kiramt	JAL-2388 Removing AlignmentPanel dependency (mostly)	commit \| commitdiff \| tree
2017-03-24	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-03-24	kiramt	JAL-2314 Tidy up	commit \| commitdiff \| tree
2017-03-24	kiramt	JAL-2314 Fixes to DisorderAnnotExportImport test	commit \| commitdiff \| tree
2017-03-23	kiramt	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2017-03-23	kiramt	JAL-2388 unit test initialisation fix for running full...	commit \| commitdiff \| tree
2017-03-23	kiramt	JAL-2314 Tweaks to stop thread sync issues	commit \| commitdiff \| tree
2017-03-23	kiramt	JAL-2314 Tidies	commit \| commitdiff \| tree
2017-03-23	kiramt	JAL-2314 Re-annotated unit tests using Jws2Discoverer	commit \| commitdiff \| tree
2017-03-23	kiramt	JAL-2388 Factored out applet overview canvas, threading...	commit \| commitdiff \| tree
2017-03-22	kiramt	JAL-2388 Rationalised overview panel drawing thread	commit \| commitdiff \| tree
2017-03-22	kiramt	Merge remote-tracking branch 'origin/develop' into	commit \| commitdiff \| tree
2017-03-22	kiramt	JAL-2461 Removed DAS error stack trace, updated message	commit \| commitdiff \| tree
2017-03-22	kiramt	JAL-2388 Reinstated original overview checks for annotation...	commit \| commitdiff \| tree
2017-03-22	kiramt	Merge remote-tracking branch	commit \| commitdiff \| tree
2017-03-22	kiramt	Merge remote-tracking branch 'origin/develop' into	commit \| commitdiff \| tree
2017-03-22	kiramt	JAL-2388 Minor changes to thread flags	commit \| commitdiff \| tree
2017-03-21	kiramt	JAL-2307 Fixed SiftsClient unit test	commit \| commitdiff \| tree
2017-03-21	kiramt	JAL-2388 Unpleasant but operational refactor into OverviewCanvas	commit \| commitdiff \| tree
2017-03-21	kiramt	JAL-2388 Made ViewportRanges final	commit \| commitdiff \| tree
2017-03-20	kiramt	JAL-2388 Comment typo	commit \| commitdiff \| tree
2017-03-17	kiramt	JAL-2388 ViewportRanges unit test	commit \| commitdiff \| tree
2017-03-17	kiramt	JAL-2437 Synchronization corrections and unit tests	commit \| commitdiff \| tree
2017-03-17	kiramt	JAL-2388 Renamed column and row subtraction functions	commit \| commitdiff \| tree
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	commit \| commitdiff \| tree
2017-03-16	kiramt	JAL-2388 Renamed viewport position props to viewport...	commit \| commitdiff \| tree
2017-03-16	kiramt	JAL-2388 Unit test update	commit \| commitdiff \| tree
2017-03-16	kiramt	JAL-2388 Applet update for overview panel	commit \| commitdiff \| tree
2017-03-16	kiramt	JAL-2439 Out-by-one in setting endRes/endSeq	commit \| commitdiff \| tree
2017-03-15	kiramt	JAL-2388 Unit tests and tidies	commit \| commitdiff \| tree
2017-03-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-03-14	kiramt	JAL-2388 Working overview panel	commit \| commitdiff \| tree
2017-03-14	kiramt	JAL-2439 Fixes to out-by-one sequence indexing in gui...	commit \| commitdiff \| tree
2017-03-14	kiramt	JAL-2388 New hidden cols/seqs functions to support...	commit \| commitdiff \| tree
2017-03-10	kiramt	JAL-2437 Fixed reordering of sequences when hiding...	commit \| commitdiff \| tree
2017-03-10	kiramt	JAL-2388 Moving some alignment panel logic into overview...	commit \| commitdiff \| tree
2017-03-09	kiramt	JAL-2426 Checks on conservation thread in case we are...	commit \| commitdiff \| tree
2017-03-09	kiramt	JAL-2426 Removal of NPE in conservation thread when...	commit \| commitdiff \| tree
2017-03-09	kiramt	JAL-2388 Minor fix for annotation graph, removed unit...	commit \| commitdiff \| tree
2017-03-07	kiramt	JAL-2388 Fixed inherited&new out-by-one errors; further...	commit \| commitdiff \| tree
2017-03-07	kiramt	JAL-2388 Additional unit tests	commit \| commitdiff \| tree
2017-03-07	kiramt	JAL-2388 Missed commit	commit \| commitdiff \| tree
2017-03-07	kiramt	Merge remote-tracking branch 'origin/develop' into...	commit \| commitdiff \| tree
2017-03-07	kiramt	JAL-2429 Messed something up, merged conflicts	commit \| commitdiff \| tree
2017-03-07	kiramt	JAL-2429 findColumnPosition returns 0 for cols in region...	commit \| commitdiff \| tree
2017-03-07	kiramt	JAL-2429 Additional fix to ColumnSelection when hidden...	commit \| commitdiff \| tree
2017-03-06	kiramt	JAL-2388 Dependency tidy	commit \| commitdiff \| tree
2017-03-06	kiramt	JAL-2388 Remove OverviewDimensions dependency on gui...	commit \| commitdiff \| tree
2017-03-06	kiramt	JAL-2388 Corrected overview panel behaviour, updated...	commit \| commitdiff \| tree
2017-03-03	kiramt	JAL-2429 Fix to ColumnSelection::findColumnPosition	commit \| commitdiff \| tree
2017-03-03	kiramt	JAL-2388 Initial removal of hidden cols/seqs out of...	commit \| commitdiff \| tree
2017-03-01	kiramt	JAL-2388 Reverted to previous	commit \| commitdiff \| tree
2017-03-01	kiramt	JAL-2388 Preliminary refactor check-in, does not compile	commit \| commitdiff \| tree
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