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Make sure annots are alignment width
2007-05-01
amwaterhouse
Make sure annots are alignment width
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2007-05-01
amwaterhouse
use jalviewLite to addFrame
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2007-05-01
amwaterhouse
remove system.out
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2007-05-01
amwaterhouse
set chains available
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2007-05-01
amwaterhouse
Multiple views/hidden region/undo out of index bug
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2007-05-01
amwaterhouse
Can specify PDB chain to map sequence to - only used...
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2007-05-01
amwaterhouse
Save seqset properties
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2007-05-01
amwaterhouse
Seqset properties saved
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2007-04-30
amwaterhouse
setVisible replaces show
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2007-04-30
amwaterhouse
Version 11.0.2
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2007-04-30
amwaterhouse
REmoved
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2007-04-27
amwaterhouse
remove excessive painting
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2007-04-27
amwaterhouse
REmove excessive painting
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2007-04-27
amwaterhouse
Repaint after feature added
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2007-04-27
amwaterhouse
Prevent err when editing and overview drawing
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2007-04-27
amwaterhouse
FeatureRenderer mixups fixed
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2007-04-27
amwaterhouse
Remove system.out AppletPDBViewer.java
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2007-04-27
amwaterhouse
Check pdbid size >0
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2007-04-27
amwaterhouse
Trouble with featureRenderers fixed
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2007-04-27
amwaterhouse
Move repaint in thread
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2007-04-27
amwaterhouse
Put alignmentProperties in scrollpane
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2007-04-27
amwaterhouse
Check feature group is visible for mouse over features
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2007-04-27
amwaterhouse
remove System.out
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2007-04-27
amwaterhouse
Add param to Jmol path
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2007-04-27
amwaterhouse
padGaps moved
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2007-04-27
amwaterhouse
Make sure mainContainer and owner are not null
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2007-04-27
amwaterhouse
Must check that featureGroup is visible for mouse over...
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2007-04-27
amwaterhouse
amendFeatures
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2007-04-27
amwaterhouse
paintAlignment(true)
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2007-04-27
amwaterhouse
Place new feature on top of existing features
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2007-04-27
amwaterhouse
Make sure sequence is in mouse over alignment
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2007-04-27
amwaterhouse
Amend Features
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2007-04-27
amwaterhouse
ColourByStructure not ready yet
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2007-04-27
amwaterhouse
aligned boxes
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2007-04-27
amwaterhouse
ThresholdIsMin available in applet
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2007-04-27
amwaterhouse
Set black if colour null
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2007-04-27
amwaterhouse
Alignment properties available
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2007-04-27
amwaterhouse
hide the initial window after selection made
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2007-04-27
amwaterhouse
one colour flag in annotation export
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2007-04-27
amwaterhouse
Annotation gradient will use direct colours if no graph...
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2007-04-27
amwaterhouse
Allow threshold to be min/max
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2007-04-27
amwaterhouse
hide annotation colouring options
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2007-04-27
amwaterhouse
Dont colour labels
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2007-04-26
amwaterhouse
check for null ss character
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2007-04-26
amwaterhouse
colourText = false
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2007-04-26
amwaterhouse
Edit seqs
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2007-04-26
amwaterhouse
remove should be removeElement
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2007-04-26
amwaterhouse
Alignment Properties required for annotation file
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2007-04-25
amwaterhouse
properties + colours
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2007-04-25
amwaterhouse
Show scores
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2007-04-25
amwaterhouse
Export annotations with properties
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2007-04-25
amwaterhouse
View Properties
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2007-04-25
amwaterhouse
fix recent file type bug
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2007-04-25
amwaterhouse
alignmentProperties added
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2007-04-23
amwaterhouse
getColour method added
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2007-04-23
amwaterhouse
Check for null displayCharacters
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2007-04-23
amwaterhouse
Dbref fetcher takes sequences, not alignment
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2007-04-23
amwaterhouse
getColour added to structures
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2007-04-23
amwaterhouse
Test out new arrangement
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2007-04-23
amwaterhouse
Get colour from structure added
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2007-04-23
amwaterhouse
check dispalyChar is not null
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2007-04-23
amwaterhouse
Check displayChar is not null
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2007-04-23
amwaterhouse
Colour is null
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2007-04-23
amwaterhouse
remove seqref annotations
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2007-04-23
amwaterhouse
remove alignmentAnnotation added
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2007-04-23
amwaterhouse
Only fetch refs for seelcted sequences
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2007-04-19
amwaterhouse
REPLACE added to edit command
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2007-04-19
amwaterhouse
Only setDropTarget if Desktop is not null
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2007-04-18
amwaterhouse
Validate range for all annotations
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2007-04-18
amwaterhouse
Redundant code commented out
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2007-04-18
amwaterhouse
hastext = false
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2007-04-18
amwaterhouse
dont set seqref null if index incorrect
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2007-04-18
amwaterhouse
featureGroups not null
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2007-04-18
amwaterhouse
Pad gaps when annotation editing
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2007-04-18
amwaterhouse
quality has text false
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2007-04-18
amwaterhouse
Quality does not have text
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2007-04-18
amwaterhouse
Alignment of labels and text
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2007-04-18
amwaterhouse
checks for scrollbar height
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2007-04-18
amwaterhouse
Disable memory checker for now
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2007-04-18
amwaterhouse
adjustForAlignment on new seq ref
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2007-04-18
amwaterhouse
Check values not null in copy constructor
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2007-04-17
amwaterhouse
Applet remembers PDBEntries, can launch multiple structures...
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2007-04-17
amwaterhouse
Add system.out for Mcview / Jmol detection
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2007-04-17
amwaterhouse
Remove system.out
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2007-04-16
amwaterhouse
drawSequence must be synchronized
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2007-04-16
amwaterhouse
Too many calls to paintAlignment
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2007-04-13
amwaterhouse
FeatureRenderer takes alignmentPanel
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2007-04-13
amwaterhouse
Check alignment has same sequence
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2007-04-12
amwaterhouse
Number pad keys can be used in cursor mode
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2007-04-11
amwaterhouse
SetTargetColour before dialog.show
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2007-04-11
amwaterhouse
Modified to compile applet with Jmol jar present
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2007-04-11
amwaterhouse
Can add features with no group
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2007-04-11
amwaterhouse
Adjustment for hidden columns
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2007-04-11
amwaterhouse
Use same mouse events as scalePanel
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2007-04-11
amwaterhouse
Amend features/annotations in applet
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2007-04-11
amwaterhouse
Used several places
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2007-04-11
amwaterhouse
If hiddenColumns are null, then column is viisble
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2007-04-11
amwaterhouse
featureAdded not in applet
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2007-04-05
amwaterhouse
Paste menu item dispalyed on right click. Memory settings...
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2007-04-05
amwaterhouse
Pasted file doesnt have title and not reloadable
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