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2010-12-09	jprocter	refactored and added methods for getting richer AlignmentVie...	commit \| commitdiff \| tree
2010-12-09	jprocter	new methods and test code for JAL-716	commit \| commitdiff \| tree
2010-12-09	jprocter	new constructor and refactored methods for intersecting...	commit \| commitdiff \| tree
2010-12-09	jprocter	new methods for testing for/storing selection/group...	commit \| commitdiff \| tree
2010-12-09	jprocter	javadoc and additional convenience method for JAL-716	commit \| commitdiff \| tree
2010-12-02	jprocter	refactored visible contig/gap map array intersection...	commit \| commitdiff \| tree
2010-11-15	jprocter	2.6.1 update	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored to decouple dependencies due to FileParse...	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored protocol check to jalview.io.FileParse	commit \| commitdiff \| tree
2010-11-14	jprocter	import annotation file from datasource	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored protocol parser and allow human readable...	commit \| commitdiff \| tree
2010-11-14	jprocter	zero length operations are valid	commit \| commitdiff \| tree
2010-11-14	jprocter	flag indicating if results should be associated immediately	commit \| commitdiff \| tree
2010-11-14	jprocter	node rename for deuniquifying trees from web service...	commit \| commitdiff \| tree
2010-11-14	jprocter	2.6.1 release details	commit \| commitdiff \| tree
2010-11-14	jprocter	ignore	commit \| commitdiff \| tree
2010-11-12	jprocter	updated version to 2.6.1	commit \| commitdiff \| tree
2010-11-12	jprocter	patch for JAL-682 - copy over current display settings...	commit \| commitdiff \| tree
2010-11-12	jprocter	patch for JAL-699 so conservation/consensus threads...	commit \| commitdiff \| tree
2010-11-12	jprocter	patch for JAL-700	commit \| commitdiff \| tree
2010-11-12	jprocter	revised logic to avoid NPE	commit \| commitdiff \| tree
2010-11-11	jprocter	improved logic for distinguishing amino acids and nucleic...	commit \| commitdiff \| tree
2010-11-11	jprocter	potential non-threadsafe condition	commit \| commitdiff \| tree
2010-11-11	jprocter	patch for JAL-655	commit \| commitdiff \| tree
2010-11-04	jprocter	optional dialog to report any problematic web service...	commit \| commitdiff \| tree
2010-11-04	jprocter	prevented URLs appearing in both the 'bad ' and the...	commit \| commitdiff \| tree
2010-11-04	jprocter	made ws warning dialog optional, and fixed its wording...	commit \| commitdiff \| tree
2010-11-04	jprocter	report any problematic web service URLs ( JAL-343 )	commit \| commitdiff \| tree
2010-11-04	jprocter	remove name of progress bar when stopping ws refresh...	commit \| commitdiff \| tree
2010-10-29	jprocter	refactored so public interfaces take instances of WsParamSet...	commit \| commitdiff \| tree
2010-10-29	jprocter	parallelised service endpoint discovery and ensured...	commit \| commitdiff \| tree
2010-10-20	jprocter	more explicit menu entry text (JAL-675)	commit \| commitdiff \| tree
2010-10-20	jprocter	resolve some layout problems : JAL-685	commit \| commitdiff \| tree
2010-10-12	jprocter	patch primary issue causing JAL-664 re testing for...	commit \| commitdiff \| tree
2010-10-12	jprocter	patch for secondary issue in JAL-664 re parsing empty...	commit \| commitdiff \| tree
2010-09-26	jprocter	2.6 release date change	commit \| commitdiff \| tree
2010-09-23	jprocter	remove overrides	commit \| commitdiff \| tree
2010-09-23	jprocter	update release branch to 2.6	commit \| commitdiff \| tree
2010-09-23	jprocter	typos and indicate 'legacy' service documentation	commit \| commitdiff \| tree
2010-09-23	jprocter	NPE race condition alert - see JAL-661	commit \| commitdiff \| tree
2010-09-23	jprocter	revised author list	commit \| commitdiff \| tree
2010-09-23	jprocter	Jalview 2.6 source licence	commit \| commitdiff \| tree
2010-09-23	jprocter	apply jalview code style	commit \| commitdiff \| tree
2010-09-23	jprocter	Jalview 2.6 source licence	commit \| commitdiff \| tree
2010-09-22	jprocter	2.6 highlights	commit \| commitdiff \| tree
2010-09-22	jprocter	update 2.6 history	commit \| commitdiff \| tree
2010-09-22	jprocter	Jmol 12 update	commit \| commitdiff \| tree
2010-09-22	jprocter	Fix and documentation for JAL-657	commit \| commitdiff \| tree
2010-09-22	jprocter	Fix and documentation for JAL-657	commit \| commitdiff \| tree
2010-09-22	jprocter	new web service dialogs and JABA	commit \| commitdiff \| tree
2010-09-22	jprocter	new export options	commit \| commitdiff \| tree
2010-09-22	jprocter	jmol update	commit \| commitdiff \| tree
2010-09-22	jprocter	jabaws, not jws2	commit \| commitdiff \| tree
2010-09-22	jprocter	trap out of memory errors specifically associated with...	commit \| commitdiff \| tree
2010-09-22	jprocter	ensure presets and parameters are discovered when service...	commit \| commitdiff \| tree
2010-09-20	jprocter	layout the menu with a minimum number of host labels	commit \| commitdiff \| tree
2010-09-20	jprocter	more attempts to fix NPE from race condition	commit \| commitdiff \| tree
2010-09-20	jprocter	only indicate that job is broken if it wasn't submitted...	commit \| commitdiff \| tree
2010-09-20	jprocter	stop race condition when submenu being populated before...	commit \| commitdiff \| tree
2010-09-20	jprocter	ensure host is shown for all non-host indexed submenus	commit \| commitdiff \| tree
2010-09-19	jprocter	resolve pdb id/chain to pdb file/model number and chain	commit \| commitdiff \| tree
2010-09-19	jprocter	name change for jaba	commit \| commitdiff \| tree
2010-09-19	jprocter	cache the runner config so the preset list can be retrieved...	commit \| commitdiff \| tree
2010-09-19	jprocter	progress bar and OOM/Exception traps for project marshalling	commit \| commitdiff \| tree
2010-09-19	jprocter	catch case when a service has no parameters (or the...	commit \| commitdiff \| tree
2010-09-19	jprocter	make sure only one sequence datasource initialization...	commit \| commitdiff \| tree
2010-09-19	jprocter	hack to ensure that if window geometry was not stored...	commit \| commitdiff \| tree
2010-09-19	jprocter	thread off sequence fetcher initialisation to make...	commit \| commitdiff \| tree
2010-09-17	jprocter	show a save dialog box!	commit \| commitdiff \| tree
2010-09-17	jprocter	poss fix for JAL-656	commit \| commitdiff \| tree
2010-09-17	jprocter	make sure web service menu is always refreshed on 'OK'	commit \| commitdiff \| tree
2010-09-16	jprocter	reflect the state of a failed Job in the GUI (e.g....	commit \| commitdiff \| tree
2010-09-16	jprocter	patch to prevent NPE - which occurs if no features...	commit \| commitdiff \| tree
2010-09-15	jprocter	clean the dist directory before copying Jars	commit \| commitdiff \| tree
2010-09-15	jprocter	update jmol	commit \| commitdiff \| tree
2010-09-15	jprocter	added colour by label to feature type colourspec and...	commit \| commitdiff \| tree
2010-09-15	jprocter	reinstated the splitpanes with better size placement...	commit \| commitdiff \| tree
2010-09-14	jprocter	fix the javac issue for JmolApplet references in application...	commit \| commitdiff \| tree
2010-09-14	jprocter	update Jmol jar ref	commit \| commitdiff \| tree
2010-09-14	jprocter	appletgui should ve excluded from normal application...	commit \| commitdiff \| tree
2010-09-14	jprocter	streamlined app and applet jmol console + event handling...	commit \| commitdiff \| tree
2010-09-13	jprocter	refactored to remove App reference in Applet (JAL-638)	commit \| commitdiff \| tree
2010-09-13	jprocter	refactored to remove App reference in Applet (JAL-638)	commit \| commitdiff \| tree
2010-09-13	jprocter	patched Jmol and code for embedding JmolAppConsole...	commit \| commitdiff \| tree
2010-09-13	jprocter	patched Jmol and code for embedding JmolAppConsole...	commit \| commitdiff \| tree
2010-09-10	jprocter	jabaws, not jaba	commit \| commitdiff \| tree
2010-09-10	jprocter	threaded off ws menu building to avoid initial pause...	commit \| commitdiff \| tree
2010-09-10	jprocter	properly report invalid jobs (server doesn't support...	commit \| commitdiff \| tree
2010-09-10	jprocter	early bail out for long urls, and threaded off group...	commit \| commitdiff \| tree
2010-09-09	jprocter	wrap preset description tooltips	commit \| commitdiff \| tree
2010-09-09	jprocter	remove duplicate host URLs in service list when not...	commit \| commitdiff \| tree
2010-09-09	jprocter	wrap tooltips and revise layout (JAL-644)	commit \| commitdiff \| tree
2010-09-09	jprocter	wrap tooltips	commit \| commitdiff \| tree
2010-09-09	jprocter	tabbed panes for parameters and options.	commit \| commitdiff \| tree
2010-09-08	jprocter	JAL-634 and JAL-635	commit \| commitdiff \| tree
2010-09-08	jprocter	JAL-634	commit \| commitdiff \| tree
2010-09-08	jprocter	todos & added simple method for other classes to monitor...	commit \| commitdiff \| tree
2010-09-08	jprocter	trap NPE possiblity for trees that have no associated...	commit \| commitdiff \| tree
2010-09-07	jprocter	right click opens view URL popup for both parameters...	commit \| commitdiff \| tree
2010-09-07	jprocter	fix for JAL-631	commit \| commitdiff \| tree
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