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JAL-3878 Use annotations from the representative sequence in the new alignment.
2021-01-12 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for...
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2021-01-12 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s...
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2020-09-25 Ben SoaresJAL-3577 Removed default JALVIEW_VERSION from gradle...
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2020-09-24 Ben SoaresJAL-3577 Quick fix adding quotation marks for findProperty...
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2020-09-11 Ben SoaresJAL-3679 Added externally specified plugins dir to...
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2020-06-04 Ben SoaresJAL-3225 Minor change to building.md for flexmark,...
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2020-06-04 Ben SoaresJAL-3225 Removed dependency on command line pandoc...
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2020-06-02 Ben SoaresJAL-3225 some fixes to build.gradle for working in...
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2020-05-27 Ben SoaresJAL-3541 ensure deletion of cloverReportDir
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2020-05-27 Ben SoaresJAL-3541 small fix for clover.xml location expected...
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2020-05-15 Ben SoaresJAL-3541 Fixed report path for build artifacts
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2020-05-14 Ben SoaresJAL-3541 Added mem setting and jvmArgs for cloverReporting
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2020-05-14 Ben SoaresJAL-3541 Individual tests now instrumented and reported...
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2020-05-12 Ben SoaresJAL-3541 Helpers for running tests, and other commands...
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2020-05-12 Ben SoaresJAL-3541 JavaExec tasks for cloverInstr and cloverReport...
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2020-04-21 Ben SoaresJAL-3577 changed default RELEASE dir in build.gradle...
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2020-04-21 Ben SoaresJAL-3577 Added newer install dirs to the deletion list...
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2020-04-21 Ben SoaresJAL-3602 Added configuration for enforced use of UTF...
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2020-04-09 Ben SoaresJAL-3588 Remove Examples folder in windows Program...
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2020-04-07 Ben SoaresJAL-3577 improvement to non-release DMG background...
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2020-04-07 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers...
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2020-04-07 Ben SoaresJAL-3577 Added DEVELOP DMG styling. Improved TEST-RELEASE...
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2020-04-06 Ben SoaresJAL-3577 Fixed Jalview Programme Group in Windows menu...
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2020-04-06 Ben SoaresJAL-3577 Moved application Categories for freedesktop...
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2020-04-06 Ben SoaresJAL-3577 removed debugging
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2020-04-06 Ben SoaresMerge branch 'task/JAL-3577_Jalview_Test_installers...
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2020-04-06 Ben SoaresJAL-3577 Added existing and new Application IDs for...
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2020-04-06 Ben SoaresJAL-3577 Changed shortName to INTERNAL_ID
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2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value...
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2020-04-05 Ben SoaresJAL-3577 Changed Windows internal ID to a new value...
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2020-04-04 Ben SoaresJAL-3577 Added DS_Store for Test release to look like...
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2020-04-03 Ben SoaresJAL-3577 Added a jalviewt scheme ONLY to TEST-RELEASE...
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2020-04-03 Ben SoaresJAL-3577 cleaned up old DMG files. Added NON-RELEASE...
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2020-04-02 Ben SoaresJAL-3577 First attempt at new folder names
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2020-04-02 Ben SoaresJAL-3572 Added getdown Implementation-Version to getdown...
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2020-04-02 Ben SoaresMerge branch 'improvement/JAL-3394_added_categories_to_unix_...
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2020-03-26 Ben SoaresJAL-3225 Also look for local.properties in file named...
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2020-03-26 Ben SoaresJAL-3225 All of .settings now gitignored. org.eclipse...
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2020-03-26 Ben SoaresJAL-3225 All of .settings now gitignored. org.eclipse...
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2020-03-25 Ben SoaresJAL-3248 Added instructions for downloading and configuring...
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2020-03-19 Ben SoaresJAL-3541 increase maxheapsize for test worker process
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2020-03-19 Ben SoaresJAL-3541 tidying build.gradle, delete cloverInstrDir...
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2020-03-19 Ben SoaresJAL-3541 put org.gradle.jvmargs explicitly into gradle...
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2020-03-18 Ben SoaresJAL-3541 merged cleanClover with develop
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2020-03-18 Ben SoaresJAL-3541 perhaps a better clean for clover. fixed
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2020-03-18 Ben SoaresJAL-3541 perhaps a better clean for clover
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2020-03-17 Ben SoaresJAL-3541 rejigged clover tasks very mildly
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2020-03-17 Ben SoaresRevert "JAL-3541 trying out previous cloverReport task"
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2020-03-17 Ben SoaresJAL-3541 trying out previous cloverReport task
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2020-03-12 Ben SoaresMerge commit '3fe5792cc63d53a5ace952bd68d3bb673c97f588...
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2020-03-12 Ben SoaresJAL-3394 updated version if install4j gradle plugin
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2020-03-12 Ben SoaresMerge branch 'develop' into improvement/JAL-3394_added_categ...
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2020-03-09 Ben SoaresJAL-3227 slightly adapted download_jres.sh to make...
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2020-03-09 Ben SoaresJAL-3394 Made Categories line configurable/readable...
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2020-03-06 Ben SoaresJAL-3394 Added Categories=Science;Biology;Java; to...
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2020-03-06 Ben SoaresJAL-3394 getdown jar files had not been re-compiled
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2020-03-06 Ben SoaresJAL-3529 improved regex in Stockholm UNIPROT accession...
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2020-03-04 Ben SoaresJAL-3468 small tidy
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2020-03-04 Ben SoaresJAL-3468 improvement to feature description truncation...
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2020-03-04 Ben SoaresJAL-3468 Fixed tests and added test for max-length...
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2020-03-04 Ben SoaresJAL-3468 Obsessively fixed self-closing <br/> tags
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2020-02-27 Ben SoaresJAL-3543 remove debugging output
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2020-02-27 Ben SoaresMerge branch 'develop' into improvement/JAL-3543_dont_report...
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2020-02-27 Ben SoaresJAL-3543 Conditional reporting of Install4j and Getdown...
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2020-02-19 Ben SoaresMerge branch 'develop' into improvement/JAL-3449_add_install...
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2020-02-19 Ben SoaresJAL-3289 Improved the name of the channel_launch.jvl...
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2020-02-19 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
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2020-02-19 Ben SoaresJAL-3337 Adding .settings/org.eclipse.jdt.core.jalview...
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2020-02-19 Ben SoaresJAL-3449 helper task to perform getdown digest on any dir
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2020-02-19 Ben SoaresJAL-3449 ensuring latest getdown jar files after merge
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2020-02-18 Ben SoaresJAL-3449 merge from develop
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2020-02-17 Ben SoaresJAL-3341 Increase number of lines looked at by test...
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2020-02-17 Ben SoaresJAL-3289 Added option and documentation for a TEST...
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2020-02-17 Ben SoaresJAL-3289 Updated doc/building.md to explain possible...
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2020-02-17 Ben SoaresJAL-3252 download-jres.sh helper script for keeping...
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2020-02-17 Ben SoaresJAL-3252 tgz unpacking no longer needed by getdown...
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2020-02-14 Ben SoaresJAL-3394 A little streamlining and fixing of helper...
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2020-02-14 Ben SoaresJAL-3394 remove no longer used files
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2020-02-13 Ben SoaresJAL-3449 getdown resilience change to launcher classpath...
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2020-02-13 Ben SoaresJAL-3227 helper shell scripts for setting up a build...
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2020-02-13 Ben SoaresJAL-3449 fix a getdownAppDir error introduced in previous...
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2020-02-13 Ben SoaresJAL-3449 More tidying of build.gradle for CHANNEL selection
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2020-02-12 Ben SoaresJAL-3289 Updated doc/building.md to explain possible...
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2020-02-12 Ben SoaresJAL-3523 No longer change CWD of getdown when invoked...
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2020-02-08 Ben SoaresJAL-3179 Version fix for taskTree gradle task in gradle 6
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2020-01-31 Ben SoaresJAL-3447 MSI installer for windows
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2020-01-29 Ben SoaresJAL-3341 Increase number of lines looked at by test...
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2020-01-24 Ben SoaresJAL-3394 Removed libjli.dylib symbolic link from embedded...
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2020-01-24 Ben SoaresJAL-3394 Variable-ise output folders -- will work better...
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2020-01-23 Ben SoaresJAL-3130 removed a debug message from build.gradle
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2020-01-23 Ben SoaresJAL-3130 Improved locations of AdoptOpenJDK JRE downloads...
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2020-01-17 Ben SoaresJAL-3252 Don't add java_location until we've got a...
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2020-01-17 Ben SoaresJAL-3447 Minor improvement on file association creation
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2020-01-13 Ben SoaresJAL-3210 gradle eclipse now uses/inserts utils/eclipse...
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2020-01-10 Ben SoaresJAL-3477 getdown jars. This commit can be left out...
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2020-01-10 Ben SoaresJAL-3477 updated getdown's jalview.bin.MemorySetting
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2020-01-10 Ben SoaresJAL-3477 Javadoc, addition of -jvmmempc and -jvmmemmax...
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2020-01-09 Ben SoaresJAL-3477 getdown jars. This commit can be left out...
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2020-01-09 Ben SoaresJAL-3477 Newer jalview.bin.MemorySetting jalview.bin...
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2020-01-09 Ben SoaresJAL-3477 Refactoring based on CR-JAL-189
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