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JAL-2794 comments comments comments
2017-11-10
kjvdheide
JAL-2794 comments comments comments
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2017-11-10
kjvdheide
JAL-2794 most method parameters/class variables made...
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2017-11-10
kjvdheide
JAL-2794 comments, selected node now doesn't have to...
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2017-11-09
kjvdheide
JAL-2794 PaintRefresher support, Aptx node selection...
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2017-11-09
kjvdheide
JAL-2794 interface comment
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2017-11-09
kjvdheide
JAL-2794 Made HashMap with Nodes as keys and sequences...
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2017-11-08
kjvdheide
JAL-2794 Aptx instances get their parent alignment...
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2017-11-08
kjvdheide
JAL-2794 Cleaning up tree conversion, sequences are...
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2017-11-08
kjvdheide
JAL-2794 getters and setters for finding nodes in forester...
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2017-11-08
kjvdheide
JAL-2795 created static class for forester conversions
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2017-11-08
kjvdheide
JAL-2794 Interface name change (oops)
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2017-11-08
kjvdheide
JAL-2794 made JalviewTreeViewerBinding an interface
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2017-11-08
kjvdheide
JAL-2794 Added getter for AlignmentViewport to TreeBuilder
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2017-11-06
kjvdheide
JAL-2794 simplified/clarified associating leaves to...
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2017-11-03
kjvdheide
JAL-2794 created tree viewer binding class
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2017-11-03
kjvdheide
JAL-2795 bunch of cleanup and comments
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2017-11-02
kjvdheide
JAL-2795 added back test loop for Aptx tree naming...
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2017-11-02
kjvdheide
JAL-2795 Reverted code changes needed to cluster from...
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2017-11-02
kjvdheide
JAL-2795 Forester now NJ-clusters the DistanceMatrix...
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2017-11-02
kjvdheide
JAL-2795 moved matrix conversion to the ForesterMatrix...
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2017-11-01
kjvdheide
JAL-2795 Sequence[] references now as SequenceI[] ...
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2017-11-01
kjvdheide
JAL-2795 removed sequences[] class variable, more comments
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2017-10-30
kjvdheide
JAL-2795 neater error message
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2017-10-30
kjvdheide
JAL-2795 added error catching for invalid identifier
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2017-10-30
kjvdheide
JAL-2795 changed getting index of identifier to Stream...
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2017-10-30
kjvdheide
JAL-2795 rebuilt MatrixConverter to be purely static
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2017-10-30
kjvdheide
JAL-2795 finalized method arguments; commited forester...
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2017-10-30
kjvdheide
JAL-2795 removed unneeded for loop (woops) and initialized...
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2017-10-30
kjvdheide
JAL-2795 implemented getting/setting identifiers
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2017-10-30
kjvdheide
JAL-2795 added comments links from ForesterMatrix to...
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2017-10-30
kjvdheide
JAL-2795 removed now unneeded values variable in ForesterMatrix
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2017-10-30
kjvdheide
JAL-2795 add get for all matrix values to MatrixI ...
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2017-10-30
kjvdheide
JAL-2795 foresterMatrix now stores distance values...
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2017-10-29
kjvdheide
JAL-2795 more matrix implementations
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2017-10-28
kjvdheide
JAL-2795 moved ForesterMatrix to ext.forester
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2017-10-28
kjvdheide
JAL-2795 Added get and set values to the converted...
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2017-10-27
kjvdheide
JAL-2795 start of Jalview's Matrix conversion
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2017-10-27
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-26
kjvdheide
Start of matrix converter
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2017-10-26
kjvdheide
Added proper title to aptx trees
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2017-10-26
kjvdheide
test name change
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2017-10-26
kjvdheide
Made FreeUpMemoryTest compatible with modified CalculationCh...
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2017-10-26
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-26
kjvdheide
Added getters for scoremodel & scoreparams in TreeBuilder
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2017-10-26
kjvdheide
TreeBuilder now stores the used ScoreModel and ScoreParams
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2017-10-26
kjvdheide
small name fixes in TreeBuilder
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2017-10-26
kjvdheide
Added TreeBuilder as parameter to the converter constructor
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2017-10-26
kjvdheide
Name changed of aptx treebuilder to treeconverter
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2017-10-26
kjvdheide
added getSeqData to TreeBuilder
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2017-10-26
kjvdheide
Added full names to the tree algorithm enum
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2017-10-26
kjvdheide
added abbreviations
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2017-10-26
kjvdheide
added enum for the different tree algorithms
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2017-10-26
kjvdheide
Couple more thread names
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2017-10-26
kjvdheide
named most Jalview threads
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2017-10-26
kjvdheide
removed accidental added enters, commented out broken...
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2017-10-25
kjvdheide
finished up tests for trees made from jalview data
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2017-10-25
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-25
kjvdheide
Implemented distance tests
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2017-10-25
kjvdheide
Implemented tree title test for tree made from Jalview
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2017-10-25
kjvdheide
Added tree title test
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2017-10-25
kjvdheide
Removed redundant annotations
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2017-10-25
kjvdheide
Added branch name tests
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2017-10-25
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-25
kjvdheide
Added abstract class for tree viewer testing, rearranged...
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2017-10-24
kjvdheide
Tests for Aptx tree created from a Phylogeny object...
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2017-10-24
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-13
kjvdheide
basic tests for Aptx
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2017-10-13
kjvdheide
ArchaeopteryxInit is now static
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2017-10-13
kjvdheide
simplified aptx frame creation code
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2017-10-13
kjvdheide
forester added as submodule
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2017-10-13
kjvdheide
Slight Aptx colour change
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2017-10-12
kjvdheide
Custom aptx configuration added
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2017-10-12
kjvdheide
moved Aptx creation from CalculationChooser to separate...
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2017-10-12
kjvdheide
Created test class for Archaeopteryx tree viewing
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2017-10-11
kjvdheide
forester as submodule with InternalFrame + start of...
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2017-10-11
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-11
kjvdheide
just a comment
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2017-10-11
kjvdheide
Added tree building (without distances yet)
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2017-10-10
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-10
kjvdheide
Start of programmatically creating Aptx trees
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2017-10-09
kjvdheide
fixed incorrect panel title
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2017-10-09
kjvdheide
Start of creating tree nodes for Aptx
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2017-10-09
kjvdheide
Fully separated tree GUI from calculation
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2017-10-07
kjvdheide
Renaming
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2017-10-06
kjvdheide
Start of creating the objects Archaeopteryx needs
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2017-10-05
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-05
kjvdheide
Blank interfaces added
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2017-10-03
kjvdheide
Proper copyright dating added
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2017-10-03
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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2017-10-03
kjvdheide
Kept copyright test to just the new classes
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2017-10-03
kjvdheide
Copyright test
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2017-09-29
kjvdheide
Begin separation of GUI and tree calculation logic
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2017-09-29
kjvdheide
Merge branch 'develop' of https://source.jalview.org...
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