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JAL-1780 just a spelling change
2015-06-04
gmungoc
JAL-1742 don't offer to align another chain to the...
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2015-06-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
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2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
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2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
gmungoc
JAL-1753 declare field with interface type; check for...
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2015-05-29
gmungoc
JAL-1753 Junit for new class
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2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
gmungoc
JAL-1753 duplicated code refactored to new class ProgressBar
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2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
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2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-20
gmungoc
JAL-796 JAL-1652 better implementation (key binding...
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2015-05-18
gmungoc
JAL-1663 detect tab out of RGB value; correct field...
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2015-05-18
gmungoc
JAL-1663 apply new colour correctly; source formatting
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2015-05-18
gmungoc
JAL-1652 Escape key now closes Find dialog
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2015-05-18
gmungoc
JAL-1737 updated JUnit so it creates positional annotations
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2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test
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2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test 'as seen'
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2015-05-15
gmungoc
JAL-1270 main method converted 'as seen' to JUnit
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2015-05-15
gmungoc
JAL-1737 ignore non-positional annotations for display
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2015-05-15
gmungoc
JAL-1270 added test for regex actually used; include...
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2015-05-15
gmungoc
JAL-1270 main methods converted to JUnit
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2015-05-14
gmungoc
JAL-1727 JAL-1270 obsolete DAS registry URL updated...
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2015-05-14
gmungoc
JAL-1270 set Cache properties in setUp to ensure test...
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2015-05-13
gmungoc
JAL-1575 no-cache headers added to (empty) rest response
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2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
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2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-12
gmungoc
JAL-1712 fixes/tests for Castor binding and 'show flanking...
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2015-05-07
gmungoc
JAL-1575 bare bones RestHandler added
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2015-05-06
gmungoc
Merge branch 'Release_2_9_Branch' of https://source...
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2015-05-06
gmungoc
JAL-1725 broadcast empty selection (to clear selection)
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2015-05-06
gmungoc
JAL-1725 limit thread pool size; prefix /jalview to...
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2015-05-06
gmungoc
JAL-1725 parse atomSpec with submodel; debug output...
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2015-05-06
gmungoc
JAL-1725 fix for redirect of POST to GET, debug output...
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2015-05-05
gmungoc
JAL-1725 jetty libraries added to classpath
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2015-05-05
gmungoc
JAL-1725 first version of Jetty server / chimera selection...
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2015-05-01
gmungoc
JAL-1684 hook added to test for fields ignored in copy...
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2015-05-01
gmungoc
JAL-1690 refining 'copy format from' as applied to...
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2015-05-01
gmungoc
JAL-1690 unused fields removed
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2015-04-29
gmungoc
JAL-1690 preserve scaling in New View, synch id width...
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2015-04-29
gmungoc
JAL-1686 ViewStyle.hashCode implemented
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2015-04-28
gmungoc
Merge branch 'Release_2_9_Branch' of https://source...
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2015-04-28
gmungoc
JAL-1684 removed reflection from ViewStyle (to Junit...
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2015-04-27
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
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2015-04-27
gmungoc
JAL-1691 more stable linked scrolling across split...
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2015-04-24
gmungoc
JAL-1691 prevent propagation of scrolling on mouseover...
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2015-04-23
gmungoc
JAL-1702 corrected check for 'no colours selected'
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2015-04-23
gmungoc
JAL-1706 distinguish between 'font too small' and ...
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2015-04-23
gmungoc
JAL-1681 create mappings before AlignFrame to ensure...
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2015-04-23
gmungoc
JAL-845 only 'follow' sort command in coding complement...
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2015-04-23
gmungoc
JAL-845 set split frame divider safely for eXpand Views
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2015-04-23
gmungoc
Merge branch 'Release_2_8_3_Branch' of https://source...
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2015-04-23
gmungoc
JAL-1706 fixed to correctly restore the last dialog...
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2015-04-22
gmungoc
JAL-845 fix SplitFrame sizing on eXpand Views
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2015-04-22
gmungoc
'Test' added to help identify "too small" font families...
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2015-04-22
gmungoc
JAL-1690 fix NPE on Cancel when not in split frame
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2015-04-21
gmungoc
JAL-1693 mappings added back to the original alignment
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2015-04-21
gmungoc
JAL-1702 wording improved; also some duplicate entries...
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2015-04-20
gmungoc
JAL-1690 shorter text to fit in FontChooser dialog
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2015-04-20
gmungoc
JAL-1701 first draft of help page for Split View (not...
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2015-04-14
gmungoc
JAL-1693 generate multiple exon sequences for 1-many...
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2015-04-13
gmungoc
JAL-1695 enableSplitFrame=true for applet example
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2015-04-13
gmungoc
JAL-1690 adjusted wording
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2015-04-13
gmungoc
JAL-1693 make exon alignment for get-xref splitframe...
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2015-04-13
gmungoc
JAL-1681 work around ConcurrentModificationException...
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2015-04-13
gmungoc
JAL-1690 show 'scale protein' in protein _and_ dna...
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2015-04-13
gmungoc
JAL-1695 new property ENABLE_SPLIT_FRAME
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2015-04-13
gmungoc
JAL-1695 parameter controls whether SplitFrame is enabled
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2015-04-08
gmungoc
JAL-1684 adjusting parameters for split frame applet...
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2015-04-08
gmungoc
JAL-1690 scaleProteinAsCdna new applet parameter documented
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2015-04-08
gmungoc
JAL-1270 protection against NullPointer when run as...
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2015-04-08
gmungoc
JAL-1691 applet SplitFrame scrolling; pull up of 5...
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2015-04-08
gmungoc
JAL-1270 separated standalone tests out of Jws2ParamView...
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2015-04-07
gmungoc
JAL-1270 test added
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2015-04-07
gmungoc
JAL-1691 linked scrollling in split frame (Desktop)
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2015-04-07
gmungoc
JAL-1691 defensive check for null
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2015-04-02
gmungoc
JAL-1690 'scale protein as cDNA' options in Preferences...
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2015-04-01
gmungoc
JAL-845 fixed start/end range of a mapped SequenceGroup
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2015-04-01
gmungoc
JAL-1264 reinstate Show annotations menu item
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2015-03-30
gmungoc
JAL-1264 remove broken applet build dependencies
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2015-03-30
gmungoc
JAL-1270 fall back on compbio if no localhost:8080...
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2015-03-30
gmungoc
JAL-1596 refactoring to allow unit tests to start and...
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2015-03-30
gmungoc
JAL-1270 Cache.logger initialisation added
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2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
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2015-03-26
gmungoc
JAL-1688 compiler warnings removed
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2015-03-26
gmungoc
JAL-1665 getSequenceFeatures; Desktop.getAlignFrames...
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2015-03-25
gmungoc
JAL-1270 System.exit(0) changed to fail() so as not...
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2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
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2015-01-27
gmungoc
JAL-1588 new class renamed
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2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
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2015-01-26
gmungoc
JAL-1588 restoring saved Chimera session(s)
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2015-01-23
gmungoc
JAL-1588 first working (?) restore of Chimera session...
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2015-01-14
gmungoc
JAL-1629 .jar option removed from Alignment File Save...
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2015-01-09
gmungoc
JAL-1588 check Chimera session file still exists
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2015-01-08
gmungoc
JAL-1588 part work save/restore of Chimera session
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2015-01-07
gmungoc
JAL-1551 formatting applied
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2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
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