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2015-06-11	Jim Procter	JAL-653 tidy comments	commit \| commitdiff \| tree
2015-06-08	Jim Procter	JAL-1766 basic test to retrieve named sequences from...	commit \| commitdiff \| tree
2015-06-08	Jim Procter	JAL-1766 test and buggy implementation of fasta index...	commit \| commitdiff \| tree
2015-06-08	Jim Procter	JAL-1766 added a snapshot build of the htsjdk	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-429 remove pointless code from phylip parser	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-653 test for GFF file recognition and alignment...	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-653 GFF recognition for identifyFile and format...	commit \| commitdiff \| tree
2015-06-07	Jim Procter	JAL-653 basic GFF3 alignment import wrapper class	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 make sure dummy sequences created during GFF...	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 first stab at parsing GFF3 pragmas to support...	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 gff version number field	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 test and testdata for importing GFF3 file with...	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 missing imports after rebase	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 test for SequenceDummy methods	commit \| commitdiff \| tree
2015-06-06	Jim Procter	JAL-653 allow a dummy sequence to take on attributes...	commit \| commitdiff \| tree
2015-06-05	Jim Procter	Merge branch 'develop' into features/JAL-653_gffalignments	commit \| commitdiff \| tree
2015-06-05	Jim Procter	JAL-653 abstract sequence model to support file backed...	commit \| commitdiff \| tree
2015-05-29	Jim Procter	Merge branch 'JAL-1755_npe_groupconsensus' into develop	commit \| commitdiff \| tree
2015-05-29	Jim Procter	JAL-1755 fix for NPE when setting up temporary variables	commit \| commitdiff \| tree
2015-05-07	Jim Procter	JAL-1731 fix JPred4 citation in legacy client code	commit \| commitdiff \| tree
2015-05-07	Jim Procter	JAL-1551 formatting	commit \| commitdiff \| tree
2015-05-07	Jim Procter	JAL-1601 migrated the JABAWS 2.1 jpred burial representation...	commit \| commitdiff \| tree
2015-04-27	Jim Procter	JAL-1645 Release_2_9 branch build tag	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch	commit \| commitdiff \| tree
2014-10-23	Jim Procter	Merge branch 'hotfix/JAL-1521' into develop	commit \| commitdiff \| tree

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