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2023-03-01	Mateusz Warowny	JAL-4136 Replace uses of isBlank with isEmpty	commit \| commitdiff \| tree
2023-02-24	Mateusz Warowny	JAL-4135 replace stream.toString(Charset) calls with...	commit \| commitdiff \| tree
2023-02-22	Mateusz Warowny	JAL-4130 Replace Collection#forEach call with for loop	commit \| commitdiff \| tree
2023-02-22	Mateusz Warowny	JAL-4130 Avoid using thenComparing of the Comparator...	commit \| commitdiff \| tree
2023-02-17	Mateusz Warowny	JAL-4131 Replace usages of requireNonNullElse	commit \| commitdiff \| tree
2023-02-16	Mateusz Warowny	JAL-4130 Workaround the j2s issue with final variables...	commit \| commitdiff \| tree
2023-02-06	Mateusz Warowny	JAL-3878 Change Cache.log calls to Console	commit \| commitdiff \| tree
2023-02-06	Mateusz Warowny	Merge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_2_12_...	commit \| commitdiff \| tree
2022-12-12	Mateusz Warowny	WIP	commit \| commitdiff \| tree
2022-04-26	Mateusz Warowny	JAL-3878 Implement RNA Sec. Str. Pred. discovery for...	commit \| commitdiff \| tree
2022-04-25	Mateusz Warowny	JAL-3878 log full worker repr in AlignCalcManager	commit \| commitdiff \| tree
2022-04-25	Mateusz Warowny	JAL-3878 Fix edit settings dialog prompting to discard...	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Use slivka client's URL when building web...	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Add conservation service discovery	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Build interactive services menu	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Implement prot. seq. an. discovery for slivka.	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Implement gui elements for annotation servicces	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Create SlivkaAnnotationWSClient	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Add full name getter to ActionI	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Log status changes in annotation task	commit \| commitdiff \| tree
2022-04-11	Mateusz Warowny	JAL-3878 Allow null value for action name	commit \| commitdiff \| tree
2022-04-07	Mateusz Warowny	JAL-3878 Add action and task for annotation services	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Introduce IProgressIndicator#addProgressBar	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Fix method name to fireTaskRestarted	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Add char[] constructor to Sequence	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Make BaseJob setters public so they can be...	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Add fullName to BaseAction class which combines...	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Move status precedence list to JobStatus class	commit \| commitdiff \| tree
2022-04-05	Mateusz Warowny	JAL-3878 Add uid to WS Tasks	commit \| commitdiff \| tree
2022-03-28	Mateusz Warowny	JAL-3878 Patch preferences window to use new discoverer.	commit \| commitdiff \| tree
2022-03-28	Mateusz Warowny	JAL-3878 Fix discoverer being stuck on BEGIN state...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Add slivka discoverer and menu to AlignFrame	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Change align frame added to desktop to correct one	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Wrap infoPanel updates with SwingUtilities...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Fix re-alignment-capable services detection.	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Clear services list on reload.	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Fix task status precedence calculation	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Fix NullPointerExceptions caused by nulls...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL3878 Implement slivka service discoverer	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Move action name initialization to its own...	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Create ws2 client for slivka services	commit \| commitdiff \| tree
2022-03-25	Mateusz Warowny	JAL-3878 Add builders to each service parameter class	commit \| commitdiff \| tree
2022-03-24	Mateusz Warowny	JAL-3878 Create service agnostic param datastore and set	commit \| commitdiff \| tree
2022-03-23	Mateusz Warowny	JAL-3878 Create beans for un/marshalling service parameters	commit \| commitdiff \| tree
2022-03-18	Mateusz Warowny	JAL-3878 Create abstract ws discoverer providing common...	commit \| commitdiff \| tree
2022-03-15	Mateusz Warowny	JAL-3878 Connect alignment services with gui	commit \| commitdiff \| tree
2022-03-14	Mateusz Warowny	JAL-3878 Move array index search to ArrayUtils	commit \| commitdiff \| tree
2022-03-11	Mateusz Warowny	JAL-3878 Create web service menu manager.	commit \| commitdiff \| tree
2022-03-11	Mateusz Warowny	JAL-3878 Add hasPresets and hasParameters utility methods...	commit \| commitdiff \| tree
2022-03-09	Mateusz Warowny	JAL-3878 Add WebServiceProviderI - a view of services.	commit \| commitdiff \| tree
2022-03-09	Mateusz Warowny	JAL-3878 Improve performance of gap sequence construction.	commit \| commitdiff \| tree
2022-03-08	Mateusz Warowny	JAL-3878 Add web service reference to actions.	commit \| commitdiff \| tree
2022-03-04	Mateusz Warowny	JAL-3878 Change visibility of WebService methods to...	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Create alignment service "backend" classes	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Remove unused JobStatus methods	commit \| commitdiff \| tree
2022-03-03	Mateusz Warowny	JAL-3878 Create abstract base classes for non-interactive...	commit \| commitdiff \| tree
2022-03-02	Mateusz Warowny	JAL-3878 Fix typo in method name (getAlignemnt)	commit \| commitdiff \| tree
2022-03-02	Mateusz Warowny	JAL-3878 Add serviceExecutor to AlignmentViewport.	commit \| commitdiff \| tree
2022-02-28	Mateusz Warowny	JAL-3878 Separate server job handle from task's sub...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Provide javadoc for WebServiceClientI interface	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create skeleton for alignment service action	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create abstract base class for actions.	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Fix typo in getTooltip method name	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Move WebServiceJob class to jalview.ws2.api...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Move CredentialType class to jalview.ws2.api...	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create TaskEventListener interface.	commit \| commitdiff \| tree
2022-02-18	Mateusz Warowny	JAL-3878 Create action and task interfaces.	commit \| commitdiff \| tree
2022-02-17	Mateusz Warowny	JAL-3878 Add interactive flag to WebService class	commit \| commitdiff \| tree
2022-02-17	Mateusz Warowny	JAL-3878 Create web service class - container for service...	commit \| commitdiff \| tree
2022-02-17	Mateusz Warowny	JAL-3878 Add WebServiceJob class.	commit \| commitdiff \| tree
2022-02-16	Mateusz Warowny	JAL-3878 Add interfaces for classes dealing with server...	commit \| commitdiff \| tree
2022-02-15	Mateusz Warowny	JAL-3878 Add universal id generator to MathUtils.	commit \| commitdiff \| tree
2021-12-23	Mateusz Warowny	Merge branch 'JAL-3927_ws_preferences_dialog_fix' into...	commit \| commitdiff \| tree
2021-12-23	Mateusz Warowny	Merge branch 'update/JAL-3066_updated_testng' into...	commit \| commitdiff \| tree
2021-11-25	Mateusz Warowny	JAL-3927 Make url checks asynchronous in preferences...	commit \| commitdiff \| tree
2021-11-23	Mateusz Warowny	JAL-3066 Fix ambiguous assertEquals casting values...	commit \| commitdiff \| tree
2021-11-18	Mateusz Warowny	JAL-3066 Remove redundant throws declaration from SlivkaPara...	commit \| commitdiff \| tree
2021-11-16	Mateusz Warowny	Merge branch 'JAL-3866_RNAalifold-slivka-client' into...	commit \| commitdiff \| tree
2021-11-16	Mateusz Warowny	Merge branch 'alpha/JAL-3899_deuniquify_refactor' into...	commit \| commitdiff \| tree
2021-10-07	Mateusz Warowny	JAL-3899 Replace prints with logger messages.	commit \| commitdiff \| tree
2021-10-06	Mateusz Warowny	JAL-3899 Update usages of uniquify and deuniquify.	commit \| commitdiff \| tree
2021-10-06	Mateusz Warowny	JAL-3899 Refactor sequence de/uniquification.	commit \| commitdiff \| tree
2021-09-02	Mateusz Warowny	Add RNAalifold service instance to slivka web services.	commit \| commitdiff \| tree
2021-07-29	Mateusz Warowny	Merge branch 'improvement/JAL-3848_slivka_0.8' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge branch 'bug/JAL-3807_jpred-with-slivka' into...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	Merge commit '0b438477b16470202bddfecb54e0587036b37202...	commit \| commitdiff \| tree
2021-07-27	Mateusz Warowny	JAL-3066 Fix NullPointerException thrown when showing...	commit \| commitdiff \| tree
2021-07-23	Mateusz Warowny	JAL-3848 Update slivka client javajs library.	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 print exception for failed align jobs	commit \| commitdiff \| tree
2021-07-21	Mateusz Warowny	JAL-3848 add latest slivka-client fixes.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'jpred-fix' into bug/JAL-3807_jpred-with...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3807 Fix SlivkaWSInstance not fetching alignments.	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	Merge branch 'bug/JAL-3849_aacon-parameters' into improvemen...	commit \| commitdiff \| tree
2021-07-09	Mateusz Warowny	JAL-3690 Remove references to old AlignCalcManager.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 SlivkaParamSet: reformat code and add service...	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3848 Update slivka client library.	commit \| commitdiff \| tree
2021-07-08	Mateusz Warowny	JAL-3849 Remove join() which blocked the ui.	commit \| commitdiff \| tree
2021-05-12	Mateusz Warowny	Revert "Merge branch 'bug/JAL-3807_jpred-with-slivka...	commit \| commitdiff \| tree
2021-03-04	Mateusz Warowny	JAL-3066 Fix NullPointerException thrown when showing...	commit \| commitdiff \| tree
2021-02-22	Mateusz Warowny	Merge branch 'bug/JAL-3807_jpred-with-slivka' into...	commit \| commitdiff \| tree
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