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2024-06-04	Jim Procter	JAL-4409 don't ignore gitignore !	commit \| commitdiff \| tree
2024-06-04	Jim Procter	JAL-4418 first development release for 2.11.4.0 - release...	commit \| commitdiff \| tree
2024-06-04	Jim Procter	Merge branch 'feature/JAL-4159_pasimap' into develop	commit \| commitdiff \| tree
2024-06-04	Jim Procter	Merge branch 'releases/Release_2_11_3_Branch' into...	commit \| commitdiff \| tree
2024-05-24	Jim Procter	JAL-4159 fix up test for applicable filters for pasimap	commit \| commitdiff \| tree
2024-05-24	Jim Procter	JAL-4159 fix PairwiseAlignmentPanelTest - reinstate...	commit \| commitdiff \| tree
2024-05-24	Jim Procter	JAL-4159 peek in a Jalview project's PCA viewer's title...	commit \| commitdiff \| tree
2024-05-24	Jim Procter	JAL-4257 JAL-4159 JAL-789 tidy up passing of score...	commit \| commitdiff \| tree
2024-05-24	Jim Procter	Merge branch 'jims/feature/JAL-4159_pasimap' into feature...	commit \| commitdiff \| tree
2024-05-24	Jim Procter	Merge branch 'features/JAL-4257_adjustablegapparams_nw...	commit \| commitdiff \| tree
2024-05-23	Jim Procter	JAL-4159 fix sense of console/alignment output suppression...	commit \| commitdiff \| tree
2024-05-23	Jim Procter	JAL-4159 disable the score model combo box when pasimap...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4259 set title using original alignment window...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4159 implement bounds for PASIMAP calculation ...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4159 connectivity should be computed for the sequences...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4159 PASiMap currently doesn't support different...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4159 sometimes the progress bar may not be available...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	Merge branch 'feature/JAL-4159_pasimap' into spike...	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4356 release date for 2.11.3.3 is 22nd May 2025	commit \| commitdiff \| tree
2024-05-21	Jim Procter	JAL-4356 release date for 2.11.3.3 is 22nd May 2025	commit \| commitdiff \| tree
2024-05-16	Jim Procter	JAL-4356 release notes for JAL-3978 patch	commit \| commitdiff \| tree
2024-05-16	Jim Procter	JAL-4356 release notes for JAL-3978 patch	commit \| commitdiff \| tree
2024-05-16	Jim Procter	Merge branch 'bug/JAL-3978_copy_bin_dir_to_getdownArchiveBui...	commit \| commitdiff \| tree
2024-05-16	Jim Procter	JAL-4418 bump release to 2.11.4.0	commit \| commitdiff \| tree
2024-05-16	Jim Procter	Merge branch 'develop' into feature/JAL-4159_pasimap	commit \| commitdiff \| tree
2024-05-16	Jim Procter	Merge branch 'feature/JAL-4386_calculate_tree_using_secondar...	commit \| commitdiff \| tree
2024-05-16	Jim Procter	Merge branch 'develop' into feature/JAL-4386_calculate_tree_...	commit \| commitdiff \| tree
2024-05-16	Jim Procter	Merge branch 'develop' into releases/Release_2_11_3_Branch	commit \| commitdiff \| tree
2024-05-16	Jim Procter	JAL-4356 bump release date to today, release notes...	commit \| commitdiff \| tree
2024-05-15	Jim Procter	Merge branch 'bug/JAL-4416_sview_not_shown_for_local_strucfi...	commit \| commitdiff \| tree
2024-05-15	Jim Procter	JAL-4416 TODO for fixing JAL-4415 JAL-3124 - need a...	commit \| commitdiff \| tree
2024-05-15	Jim Procter	JAL-4416 ensure the structure view is shown and any...	commit \| commitdiff \| tree
2024-05-15	Jim Procter	JAL-4416 make sure the structure viewer is actually...	commit \| commitdiff \| tree
2024-05-15	Jim Procter	Merge branch 'bug/JAL-4407_no_sec_str_from_draganddrop_to_ms...	commit \| commitdiff \| tree
2024-05-14	Jim Procter	Merge branch 'develop' into releases/Release_2_11_3_Branch	commit \| commitdiff \| tree
2024-05-14	Jim Procter	JAL-4356 fix release note	commit \| commitdiff \| tree
2024-05-14	Jim Procter	Merge branch 'develop' into releases/Release_2_11_3_Branch	commit \| commitdiff \| tree
2024-05-14	Jim Procter	JAL-4356 set release date to Weds 15th May and update...	commit \| commitdiff \| tree
2024-05-13	Jim Procter	Merge branch 'develop' into releases/Release_2_11_3_Branch	commit \| commitdiff \| tree
2024-05-13	Jim Procter	JAL-4356 JAL-518 JAL-4413 release notes	commit \| commitdiff \| tree
2024-05-13	Jim Procter	Merge branch 'features/JAL-518_justify_seqs_in_region...	commit \| commitdiff \| tree
2024-05-13	Jim Procter	JAL-518 better test coverage and support for case preservation	commit \| commitdiff \| tree
2024-05-13	Jim Procter	JAL-518 failing test for case preservation on justify	commit \| commitdiff \| tree
2024-05-13	Jim Procter	Merge branch 'develop' into features/JAL-518_justify_seqs_in...	commit \| commitdiff \| tree
2024-05-13	Jim Procter	JAL-4413 timeouts Merge branch 'improvement/JAL-4217_added_a...	commit \| commitdiff \| tree
2024-05-13	Jim Procter	Merge branch 'develop' into features/JAL-518_justify_seqs_in...	commit \| commitdiff \| tree
2024-05-10	Jim Procter	JAL-4411 fix typo :(	commit \| commitdiff \| tree
2024-05-10	Jim Procter	JAL-4411 store class of provider in PDBEntry	commit \| commitdiff \| tree
2024-05-01	Jim Procter	JAL-4407 don't transfer 'local' settings - leave as...	commit \| commitdiff \| tree
2024-05-01	Jim Procter	JAL-4407 failing test checking for secondary structure...	commit \| commitdiff \| tree
2023-03-17	Jim Procter	JAL-3921 allow Jmol saveState to be executed as evalScriptWa...	commit \| commitdiff \| tree
2023-01-23	Jim Procter	JAL-4102 whatsNew for 2.11.2.6	commit \| commitdiff \| tree
2023-01-20	Jim Procter	Merge branch 'patch/JAL-4114_updated_3dbeacons_api...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 model_page_url not required in v2.0 response	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4102 update date and release notes for 2.11.2.6	commit \| commitdiff \| tree
2023-01-20	Jim Procter	Merge branch 'patch/JAL-4114_updated_3dbeacons_api...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	Merge branch 'patch/Release_2_11_2_6_Branch' into develop	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-2353 primary ref candidates that should be promoted...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 missing mock server response	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 only rank model qualities that are computed...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 alphafold now marked as AB-INITIO so adjust...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 additional warnings when PDBe doesn’t return...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 patch REST client for changed JSON schema...	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 formatting	commit \| commitdiff \| tree
2023-01-20	Jim Procter	JAL-4114 updated mock tests and responses for v2.0 api	commit \| commitdiff \| tree
2022-11-30	Jim Procter	JAL-4102 bump version number	commit \| commitdiff \| tree
2022-11-30	Jim Procter	JAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL...	commit \| commitdiff \| tree
2022-11-30	Jim Procter	JAL-2353 patch for Ensembl refs from uniprot - needs...	commit \| commitdiff \| tree
2022-11-03	Jim Procter	JAL-3855 JAL-4095 simple picking of ranges adjacent...	commit \| commitdiff \| tree
2022-10-30	Jim Procter	JAL-2349 JAL-3855 bizarre resizing exception when resizing...	commit \| commitdiff \| tree
2022-10-30	Jim Procter	JAL-4091 lines to associate rows sharing same sequence...	commit \| commitdiff \| tree
2022-10-30	Jim Procter	JAL-2353 patch for Ensembl refs from uniprot - needs...	commit \| commitdiff \| tree
2022-10-29	Jim Procter	JAL-4094 shift+click drag up/down to resize all annotation...	commit \| commitdiff \| tree
2022-10-29	Jim Procter	JAL-4091 - noodling about including the names for sequences...	commit \| commitdiff \| tree
2022-10-29	Jim Procter	JAL-4090 bump version and set up release notes for...	commit \| commitdiff \| tree
2022-10-29	Jim Procter	Merge branch 'features/JAL-4061_and_JAL-4062_findselectfeatu...	commit \| commitdiff \| tree
2022-10-28	Jim Procter	Merge branch 'bug/JAL-4083_exceptions_for_multiple_residue_h...	commit \| commitdiff \| tree
2022-10-28	Jim Procter	JAL-2349 allow contact matrix to provide labels for...	commit \| commitdiff \| tree
2022-10-28	Jim Procter	JAL-4086 commented out attempt to create measurement...	commit \| commitdiff \| tree
2022-10-28	Jim Procter	JAL-4089 use column selection to superpose if 4 or...	commit \| commitdiff \| tree
2022-10-28	Jim Procter	JAL-2961 centerViewOn command for structure viewers...	commit \| commitdiff \| tree
2022-10-28	Jim Procter	Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...	commit \| commitdiff \| tree
2022-10-26	Jim Procter	JAL-4086 quick and dirty mouseovers on ruler highlighting...	commit \| commitdiff \| tree
2022-10-22	Jim Procter	JAL-2349 JAL-3855 highlight residues associated with...	commit \| commitdiff \| tree
2022-10-21	Jim Procter	JAL-2349 JAL-3855 fix failing tests	commit \| commitdiff \| tree
2022-10-21	Jim Procter	JAL-2349 JAL-3855 experiment masking hidden columns...	commit \| commitdiff \| tree
2022-10-21	Jim Procter	JAL-4033 - heuristic threshold for pAE matrix - mark...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 formatting/pick correct exception	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 JAL-3855 off by one and daft return	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 avoid div-by-zero when annotation height is...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 JAL-3855 adapt renderer for AlignmentI.getContactLi...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 JAL-3855 ContactListI.getPosition() to recover...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 JAL-3855 experimenting with filtering columns...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-3855 JAL-2349 AlignmentI.getContactList takes care...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-4033 fix drag selections and distinguish row/columnwise...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 (still buggy) interactive selection - time...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 tooltip reports value from contact range	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 adjusted range calculation to be inclusive...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 debugged click/drag and added yellow rubber...	commit \| commitdiff \| tree
2022-10-20	Jim Procter	JAL-2349 JAL-3855 - interactive point-wise row/column...	commit \| commitdiff \| tree
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