git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
Merge branch 'JAL-1397' into develop
2014-05-02 Jim ProcterMerge branch 'JAL-1397' into develop
 commit | commitdiff | tree
2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colours...
commit | commitdiff | tree
2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct...
commit | commitdiff | tree
2014-05-02 Jim Procterformatting
 commit | commitdiff | tree
2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1397 (probably buggy) test for recovery of background...
commit | commitdiff | tree
2014-05-01 Jim Procterremove todo
 commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs
 commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on...
commit | commitdiff | tree
2014-05-01 Jim Procterjavadoc
 commit | commitdiff | tree
2014-05-01 Jim Procterproperly quit so JUnit marks tests as successful
 commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for...
commit | commitdiff | tree
2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current...
commit | commitdiff | tree
2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides
 commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment...
commit | commitdiff | tree
2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker...
commit | commitdiff | tree
2014-05-01 Jim Proctermake sure valid value for non-gapped calculation with...
commit | commitdiff | tree
2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow...
commit | commitdiff | tree
2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into develop
 commit | commitdiff | tree
2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy...
commit | commitdiff | tree
2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlighting...
commit | commitdiff | tree
2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three...
commit | commitdiff | tree
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into develop
 commit | commitdiff | tree
2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-1322 avoid rounding error causing non functional...
commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-1322 allow slider to reach maximum value for parameter
 commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-1322 only update slider when return is pressed
 commit | commitdiff | tree
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into develop
 commit | commitdiff | tree
2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into develop
 commit | commitdiff | tree
2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown...
commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder prediction...
commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices coloursche...
commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-952 JAL-1268 document RNA Helices and T-Coffee...
commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list...
commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices'
 commit | commitdiff | tree
2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colouring...
commit | commitdiff | tree
2014-04-27 Jim Proctertest for JAL-952
 commit | commitdiff | tree
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into develop
 commit | commitdiff | tree
2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-25 Jim Procterfix for JAL-1268
 commit | commitdiff | tree
2014-04-25 Jim Proctertest for JAL-1268
 commit | commitdiff | tree
2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset...
commit | commitdiff | tree
2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only...
commit | commitdiff | tree
2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML...
commit | commitdiff | tree
2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that...
commit | commitdiff | tree
2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to...
commit | commitdiff | tree
2014-04-25 Jim ProcterJAL-1177 refactored command line test harness
 commit | commitdiff | tree
2014-04-25 Jim Proctertest for JAL-1177 store and recover RNA secondary structure...
commit | commitdiff | tree
2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set...
commit | commitdiff | tree
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into develop
 commit | commitdiff | tree
2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release
 commit | commitdiff | tree
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into develop
 commit | commitdiff | tree
2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1458 updated logo for installer
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1355 keys for colours
 commit | commitdiff | tree
2014-04-21 Jim Procterfix for JAL-1438
 commit | commitdiff | tree
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into develop
 commit | commitdiff | tree
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1485 JAL-1483 show i18n key for different available...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 JAL-1355 i18n for score model submenu
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1485 JAL-1473 use compound i18n messages to construct...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1485
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1484 always update the dataset sequence if 'trimDatasetS...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1466 don't include empty columns if no upstream...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1355 JAL-1466 i18n for flanking sequence menu entry...
commit | commitdiff | tree
2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-741 (poss related JAL-971) - fix NPE raised when...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1476 JAL-1016 avoid NPE messiness if structures...
commit | commitdiff | tree
2014-04-21 Jim Procterdon't unhook existing group associated annotation JAL...
commit | commitdiff | tree
2014-04-21 Jim Procterfix for JAL-1478
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1478 test to demonstrate bug
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1477 tooltip
 commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1476 - don't send broken commands to Jmol when...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1477 first implementation of 'View all representative...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1466 import full length sequence to dataset sequence...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1466 flag and jalview_properties setting to control...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1466 improved test and patched off by one that...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1466 new calculation menu option to recover the...
commit | commitdiff | tree
2014-04-21 Jim Proctertidy imports
 commit | commitdiff | tree
2014-04-21 Jim Procterpatch v2 for JAL-1474 add the newly recovered dataset...
commit | commitdiff | tree
2014-04-21 Jim Procterpatch v1 for JAL-1474 - make sure we actually set the...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1474 note about buggy 'merge sequence' operation...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 tree calcs performed with ScoreModelI instances
 commit | commitdiff | tree
2014-04-21 Jim Procterdon't finness the alignment annotation modification...
commit | commitdiff | tree
2014-04-21 Jim Procterpatch for JAL-1465 - set min/max thresholds for each...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 menu entries for different score models available...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 provide Amino acid physicochemical conservation...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 show available score matrices for use in PCA...
commit | commitdiff | tree
2014-04-21 Jim ProcterJAL-1473 refactor score matrices and tree score calculations...
commit | commitdiff | tree
next