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update of javajs package; adds org.apache.harmony, org.xml.sax.helpers
2018-06-20 gmungocJAL-3032 load properties as "java.properties"
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2018-06-20 gmungocJAL-3030 suppress change that goes with JAL-3031
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2018-06-20 gmungocJAL-3030 reads features file, properties file
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2018-06-19 gmungocJAL-3030 added menu bar
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2018-06-19 gmungocJAL-3030 first cut of JalviewJS.main entry point accepting...
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2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
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2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
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2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
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2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
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2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
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2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
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2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
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2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
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2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-05-25 gmungocJAL-2992 simpler heuristic for available height
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2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
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2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
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2018-05-24 gmungocJAL-2997 additional tests
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2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-23 gmungocJAL-2997 unit test
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2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
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2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
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2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
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2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates
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2018-05-11 gmungocJAL-2986 failing test added
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2018-05-09 gmungocJAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-07 gmungocJAL-2808 ensure test setUp/tearDown alwaysRun
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2018-05-07 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-05-04 gmungocJAL-2906 small tweaks to release notes
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2018-04-24 gmungocJAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-23 gmungocJAL-2954 more efficient SearchResults.markColumns
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2018-04-23 gmungocJAL-2952 set negative TempFactor values as AlignmentAnnotati...
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2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18 gmungocJAL-2593 render 'duplicate' features if transparency...
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2018-04-13 gmungocMerge branch 'features/JAL-2944_openStructuresInSelectedView...
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2018-04-12 gmungocJAL-2223 don't add duplicate mappings to StructureSelectionM...
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2018-04-12 gmungocJAL-1847 minor post-review updates
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2018-04-12 gmungocJAL-2944 tidies for review comments
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2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
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2018-03-21 gmungocJAL-2754 renamed proguard.jar to include version number
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2018-03-21 gmungocJAL-2754 5.3.3 update of proguard.jar
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2018-03-21 gmungocJAL-2754 update to specify Java 1.8(+)
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2018-03-21 gmungocJAL-2754 update to Java 1.8
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2018-03-16 gmungocJAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
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2018-03-16 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-16 gmungocJAL-2922 update FeatureRenderer and repaint feature...
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2018-03-16 gmungocMerge branch 'bug/JAL-2865removeGC' into develop
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2018-03-15 gmungocJAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14 gmungocJAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-14 gmungocJAL-2679 reinstating changes lost in VCF merge
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2018-03-13 gmungocJAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-08 gmungocMerge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-08 gmungocJAL-2885 tests updated for code changes
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2018-03-08 gmungocJAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 [2] not [1] for Boolean column of table
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2018-03-07 gmungocMerge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07 gmungocJAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07 gmungocMerge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07 gmungocJAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07 gmungocJAL-2925 handle empty annotation when copying group...
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2018-03-07 gmungocJAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-02-28 gmungocJAL-2924 no tooltip over null annotation positions
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2018-02-20 gmungocJAL-2897 updated unit test for code change
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2018-02-20 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2018-02-09 gmungocJAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09 gmungocJAL-2789 code format changes only (before functional...
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2018-02-09 gmungocJAL-2666 fix failure to scroll split alignment of height 1
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2018-02-08 gmungocJAL-2666 basic initial fix for split screen scroll bug
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2018-02-07 gmungocJAL-2808 ensure pattern field re-enabled when needed...
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-05 gmungocMerge branch 'spikes/mungo' into trialMerge
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2018-02-05 gmungocJAL-2897 more informative description on synonymous...
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2018-02-02 gmungocJAL-984 merged to spikes-mungo
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2018-02-02 gmungocMerge branch 'feature/JAL-984splitAdjuster' into features...
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2018-02-02 gmungocJAL-2899 asynchronous Jmol colour updates
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2018-02-02 gmungocJAL-984 use cursor for drag regions to adjust annotation...
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2018-02-02 gmungocJAL-984 better behaved panel height adjuster
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2018-02-01 gmungocJAL-2899 update structure and overview on slider drag...
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2018-01-31 gmungocJAL-2792 added tooltip to menu items in case of truncation
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2018-01-30 gmungocJAL-2069 menu item now "Variable colour..." to hint...
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2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
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2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences
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2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon...
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2018-01-30 gmungocJAL-2897 formatting change only prior to functional...
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2018-01-29 gmungocMerge branch 'feature/JAL-2759' of https://source.jalview...
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2018-01-29 gmungocJAL-1270 testPadGaps() added
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2018-01-29 gmungocJAL-2743 recoded EnsemblLookup without lambda expressions...
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2018-01-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2018-01-18 gmungocJAL-2810 JAL-2886 i18n
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2018-01-18 gmungocJAL-2679 update query id to actual case of retrieved...
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2018-01-17 gmungocJAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16 gmungocJAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load
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2018-01-10 gmungocJAL-2865 unhelpful System.gc() calls removed
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2018-01-10 gmungocJAL-1793 update spike branch to latest
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