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JAL-1919 updated unicode mapping symbol
2016-02-05
gmungoc
JAL-2006 scale even very small score ranges to a usable...
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2016-02-04
gmungoc
JAL-2005 added (stable) sort methods parameterised by
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2016-02-04
gmungoc
JAL-599 bug fixed so array of visible types is populated
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2016-01-11
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-01-11
gmungoc
JAL-1989 additional ways to 'mirror' show/hide columns...
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2016-01-11
gmungoc
JAL-1989 map hidden column ranges
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2016-01-11
gmungoc
JAL-1989 more unit tests and encapsulation for ColumnSelection
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2016-01-11
gmungoc
JAL-1544 "more than" not "more that"
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2015-12-03
gmungoc
JAL-1827 code and comment tidy up
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2015-12-02
gmungoc
JAL-1827 refactored to handle missing residues better
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2015-12-02
gmungoc
JAL-1827 added overloaded method for convenience
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2015-12-02
gmungoc
JAL-1827 reverted text on generic sequence fetcher...
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2015-11-06
gmungoc
JAL-1946 unit tests (and comments) for PID() function
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2015-11-06
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-10-28
gmungoc
JAL-1946 additional unit test cases for PID calculation
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2015-10-23
gmungoc
JAL-1943 don't try to unmarshal non-xml files in V1...
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2015-10-22
gmungoc
JAL-1932 TrimRegionCommand bug fix, tests and purge...
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2015-10-08
gmungoc
JAL-1544 typo fix
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2015-10-05
gmungoc
JAL-1812 set/return currentAlFrame for Groovy in headless...
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2015-10-05
gmungoc
JAL-1684 JAL-1452 new applet parameters defaultColourNuc
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2015-10-02
gmungoc
JAL-1815 restore split frame geometry including horizontal...
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2015-09-28
gmungoc
JAL-1909 repaint complementary alignment panel after...
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2015-09-25
gmungoc
JAL-1859 try hoverDelay of 0.1s in Jmol for more responsive...
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2015-09-25
gmungoc
JAL-1815 restore split frame geometry correctly including...
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2015-09-24
gmungoc
JAL-1905 parse url including & correctly
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2015-09-24
gmungoc
JAL-1904 parse feature file colours on to alignment...
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2015-09-22
gmungoc
JAL-1894 release notes updated
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2015-09-22
gmungoc
JAL-1424 tidied output
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2015-09-22
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-22
gmungoc
JAL-1859 adding "set hoverDelay 0.001;" to Jmol startup...
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2015-09-21
gmungoc
JAL-1892 duplicate entry removed
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2015-09-21
gmungoc
JAL-1799 update height of annotation labels to match...
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2015-09-21
gmungoc
JAL-1892 Spanish additions for Jalview 2.9
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2015-09-21
gmungoc
JAL-1152 set initial state of show alignment/sequence...
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2015-09-21
gmungoc
JAL-1152 small change to match revised annotation sorting...
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2015-09-21
gmungoc
JAL-1619 obsolete help removed
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2015-09-18
gmungoc
JAL-1270 disable test as not really a test and goes...
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2015-09-18
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-18
gmungoc
JAL-1805 typo corrected
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2015-09-18
gmungoc
JAL-1788 typos corrected
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2015-09-18
gmungoc
JAL-1788 broken href fixed
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2015-09-18
gmungoc
JAL-1859 reinstated full path to file option (for local...
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2015-09-18
gmungoc
JAL-1424 Ant task to report missing language bundle...
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2015-09-16
gmungoc
JAL-1882 variable renamed to avoid confusion with member...
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2015-09-16
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-16
gmungoc
JAL-1885 small fix to isVersionStringLaterThan plus...
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2015-09-16
gmungoc
JAL-1684 typo correction
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2015-09-16
gmungoc
JAL-1859 removed temporary test copy of pdb file
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2015-09-16
gmungoc
JAL-1859 refactor duplicated code to new HttpUtils...
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2015-09-16
gmungoc
JAL-1859 code tidy, remove 'absolute URL' option
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2015-09-16
gmungoc
JAL-1859 working variable to aid inspection in debugger
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2015-09-16
gmungoc
JAL-1859 try 1gaq.txt in /lang so it is in the built jar
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2015-09-16
gmungoc
JAL-1859 debug logging removed
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2015-09-16
gmungoc
JAL-1859 revert to resolving full path to PDB file
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2015-09-16
gmungoc
JAL-1859 refactor addProtocol, setProtocolState as...
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2015-09-16
gmungoc
JAL-1859 temporary debug output
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2015-09-15
gmungoc
JAL-1859 use unresolved PDB filename
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2015-09-15
gmungoc
JAL-1859 strip file name from applet documentbase
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2015-09-15
gmungoc
JAL-1859 refactoring / debugging added
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2015-09-14
gmungoc
JAL-1865 fixed so initial state of annotation sort...
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2015-09-14
gmungoc
JAL-1851 add retrieved sequence's start (-1) to match...
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2015-09-14
gmungoc
JAL-1880 updated mapping tests to ensure they handle...
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2015-09-14
gmungoc
JAL-1270 test added for separatorListToArray
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2015-09-14
gmungoc
JAL-1880 handle sequence offsets properly when mapping...
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2015-09-14
gmungoc
JAL-1684 align added alignment to match original in...
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2015-09-14
gmungoc
JAL-1684 align added alignment to match original in...
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2015-09-14
gmungoc
JAL-1684 ensure cDNA placed above protein in SplitFrame
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2015-09-09
gmungoc
JAL-857 debug=true for Jmol example diagnosis
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2015-09-09
gmungoc
JAL-857 added debug output to track down document base...
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2015-09-09
gmungoc
JAL-1619 update applet.currentAlignFrame on any menu...
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2015-09-09
gmungoc
JAL-1619 'align protein as cDNA' now leaves unmapped...
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2015-09-08
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-08
gmungoc
JAL-1859 debug output of pdb mappings (mine and SSMs)
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2015-09-08
gmungoc
JAL-1859 reverted to signed JalviewApplet.jar!
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2015-09-08
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-08
gmungoc
JAL-1859 Jmol applet black background; fix _jvmols...
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2015-09-07
gmungoc
JAL-1859 Jmol linked applet updated to use Jmol2.js
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2015-09-07
gmungoc
JAL-1636 translate stop codon as '*', mouseover * as...
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2015-09-07
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-07
gmungoc
JAL-1152 check 'autocalculated' not 'null sequenceRef...
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2015-09-04
gmungoc
JAL-1859 jmolFindTarget not JmolFindTarget
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2015-09-04
gmungoc
JAL-1859 embedded Jmol applet example updated for Jmol...
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2015-09-03
gmungoc
JAL-1859 removed unneeded dependency on package not...
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2015-09-03
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-03
gmungoc
JAL-1690 scaleProteinAsCdna new optional attribute...
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2015-09-03
gmungoc
JAL-1828 lookup table to convert MSE to MET when parsing...
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2015-09-03
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-02
gmungoc
JAL-1544 spelling
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2015-09-02
gmungoc
JAL-1355 User error text externalised to message bundle
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2015-09-02
gmungoc
JAL-1768 set initial 'enabled' state for id width label...
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2015-09-02
gmungoc
JAL-1264 test made i18n robust
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2015-09-02
gmungoc
JAL-1768 enable fixed width output when auto-width...
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2015-09-02
gmungoc
JAL-1843 fixed input/add from textbox; added @Override...
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2015-09-02
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-02
gmungoc
JAL-1619 additions, standardised menu item symbols
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2015-09-02
gmungoc
JAL-1681 mention of cDNA consensus added
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2015-09-02
gmungoc
JAL-1673 new test to verify transferRESNUMFeatures()
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2015-09-02
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-09-01
gmungoc
JAL-1693 split frame opened for get xrefs, translate...
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2015-09-01
gmungoc
JAL-1672 additional assertions added
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