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2006-08-22	amwaterhouse	Put transparency back	commit \| commitdiff \| tree
2006-08-22	amwaterhouse	make 1.1 compatible	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	header updated	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	header updated	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	validate groupPanel	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	validate groupPanel	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	Add uniprot DBref	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2006-08-21	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	Check colourScheme is not null - jalview prior 2.5...	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	dont remove all representative seqs on delete groups	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	remove all representative seqs on delete groups	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	treeFile = treeFile	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	Only discover DAS sources if panel shown	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	only set new layout if 2 buttons visible	commit \| commitdiff \| tree
2006-08-18	amwaterhouse	Jalview features format adds links as hrefs	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	H key updates	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	OptionPane invokeLater	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	If no annotation exists	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	Set bg white	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	Hold onto selected region when hiding all columns only	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	Monospace check	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	1 more pixel allowed between chars and graph	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	Keys update	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	control and shift	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	Dont set group null hideCOls	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	OptionPanes invokeLater	commit \| commitdiff \| tree
2006-08-17	amwaterhouse	Control and alt for toggle hide	commit \| commitdiff \| tree
2006-08-16	amwaterhouse	Fire alignment changed if seqs hidden / revealed	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Correct title for sequence parameter applets	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Sequences can be added as parameter	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	H key added	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Acknowledgement	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Setselectiongroup null on hide	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	H key to hide / reveal	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Add key listener to scalePanel and annotationPanel	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Select revealed seqs	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	WRITEABLE_FORMATS and READABLE_FORMATS string []	commit \| commitdiff \| tree
2006-08-15	amwaterhouse	Move features to dataset	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Stockholm parser added	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Stockholm parser	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	New file	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	new feature added	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Stop loading must be before JOptionPane, 1.5 bug	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	No need to check selection group size	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	findSequenceMatch returns multiple sequences	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Do a loop for multiple seq matches	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Correct test string	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	findingFeatures flag set	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	2.1 new files	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Replaced image	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	Merged with edit	commit \| commitdiff \| tree
2006-08-14	amwaterhouse	elementAt instead of get for 1.1 compatibility	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Update overview on conservation/pid slider mouseRelease	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	alignpanel.repaint	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Add links menu if no sequence is selected	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	popup must be added to panel before showing	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	param tree replaces treeFile	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	2.1 updates	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	new files	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	dud file	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Desktop is null if -noDisplay is set	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Make a new FeatureRenderer	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	AlignPanel.repaint	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Printstacktrace	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	inFile might be null if PDB was pasted	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Smoother drawing	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Check selection size before making tree	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	group.getSize should be ab.alignment.getGroups	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Check alAndColSel are not null	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Control and shift for col selection	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Reset button added	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Right mouse works with cursor mode	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Only add 1 feature settings table	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Comment out start and end refs	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	file: is a URL	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Invert column selection	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Must save all the feature settings	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Check if groups have already been added or not	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Fix for local sources with no capabilities	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Icon drawing updated	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Null hidden cols check	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	No need to re repaint	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Height and info message	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Transparency	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Endres check for wrap alignment	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Set the start res and start seq	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Copy hidden cols to new alignment	commit \| commitdiff \| tree
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