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JAL-4416 make sure the structure viewer is actually opened when handling local file...
2024-05-15 Jim ProcterJAL-4416 make sure the structure viewer is actually...
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2024-05-15 Jim ProcterMerge branch 'bug/JAL-4407_no_sec_str_from_draganddrop_to_ms...
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2024-05-14 Jim ProcterJAL-4356 fix release note
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2024-05-14 Jim ProcterJAL-4356 set release date to Weds 15th May and update...
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2024-05-13 Jim ProcterJAL-4356 JAL-518 JAL-4413 release notes
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2024-05-13 Jim ProcterMerge branch 'features/JAL-518_justify_seqs_in_region...
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2024-05-13 Jim ProcterJAL-518 better test coverage and support for case preservation
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2024-05-13 Jim ProcterJAL-518 failing test for case preservation on justify
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2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_seqs_in...
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2024-05-13 Jim ProcterJAL-4413 timeouts Merge branch 'improvement/JAL-4217_added_a...
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2024-05-13 Jim ProcterMerge branch 'develop' into features/JAL-518_justify_seqs_in...
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2024-05-01 Jim ProcterJAL-4407 don't transfer 'local' settings - leave as...
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2024-05-01 Jim ProcterJAL-4407 failing test checking for secondary structure...
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2023-10-02 jprocterJAL-4090 more JAL-3858 docs
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2023-10-02 jprocterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
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2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concrete...
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2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local...
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2015-06-05 Jim ProcterJAL-1551 formatting
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2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source...
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2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first...
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2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES
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2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequence...
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2015-06-05 Jim ProcterJAL-1551 formatting
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2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute...
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2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface...
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2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instance...
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2015-06-05 Jim ProcterJAL-653 codon frames go on the dataset
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2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate...
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2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein...
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2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
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2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name...
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2015-06-05 Jim ProcterJAL-1551 formatting
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2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into Release_2_8_3_B...
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2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to...
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2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch
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2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in...
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2015-03-06 Jim Procterreassign features already created/documented for 2...
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2015-03-06 Jim ProcterMerge branch 'Release_2_8_2b1_Branch'
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2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
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2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7...
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2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
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2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq
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2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath...
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2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
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2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in...
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2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
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2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources
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2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into...
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2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions...
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2015-02-27 Jim Procterfix for JAL-1678
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2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes
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2015-02-12 Jim ProcterJAL-1350 document changed behaviour
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2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test
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2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected...
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2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using...
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2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup
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2015-02-12 Jim ProcterJAL-1115 typecast
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2015-02-12 Jim Procterjavadoc
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2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups...
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2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement...
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2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and...
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2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries...
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2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYLIB...
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2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number
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2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the sequence...
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2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToRefPDB...
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2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature...
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2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into...
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2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now...
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2015-01-23 Jim ProcterJAL-1551 formatting
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2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream...
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2015-01-23 Jim ProcterJAL-1551 crlf changes
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2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method
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2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checking...
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2015-01-23 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referenceseq
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2015-01-23 Jim ProcterJAL-1628 tweak signature of core annotation printer...
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2015-01-23 Jim ProcterJAL-1551 formatting/imports
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2015-01-23 Jim ProcterJAL-1551 JAL-962 formatting and code change ripples...
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2015-01-23 Jim ProcterJAL-1551 source code formatting
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2015-01-23 Jim ProcterJAL-969 javadoc and mark interface overrides for clarity
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2015-01-23 Jim ProcterJAL-1628 drop getShowAnnotation accessor in favour...
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2015-01-22 Jim ProcterJAL-1372 JAL-1169 documentation for new commands HIDE_INSERT...
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2015-01-21 Jim ProcterMerge branch 'develop' into feature_29/JAL-1372_referenceseq
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2015-01-21 Jim Proctertidy up class files that shouldn't be in repo
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2015-01-20 Jim ProcterJAL-1304 revamped annotation file documentation structure...
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2015-01-18 Jim ProcterJAL-1372 i18n and tweaking set/unset representative...
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2015-01-18 Jim ProcterJAL-1628 formatting
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2015-01-18 Jim ProcterJAL-1628 employ new AnnotationFile reader method to...
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2015-01-18 Jim ProcterJAL-1628 new entry point for reading annotation files...
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2015-01-18 Jim ProcterJAL-1628 formatting and javadoc
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2015-01-18 Jim ProcterJAL-1628 method to hide insertions to current sequence...
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2015-01-18 Jim ProcterJAL-1628 wrappers for common checks on ColumnSelection
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2015-01-18 Jim ProcterJAL-1628 ColumnSelection method to hide insertions...
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2015-01-18 Jim ProcterJAL-1628 new method to get a list of insertions in...
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2015-01-18 Jim Procteralways use interface rather than field access
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2015-01-18 Jim ProcterJAL-1372 JAL-1114 JAL-1628 tidy sequenceI/sequence
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2015-01-09 Jim ProcterMerge branch 'JAL-1372_referenceseq' into feature_29...
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2015-01-09 Jim ProcterMerge branch 'JAL-1483_29dev' into develop
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2015-01-09 Jim ProcterJAL-1483 formatting
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2015-01-09 Jim ProcterJAL-1483 remember to look at base dataset sequence...
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