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2009-06-01	jprocter	first experiment with GA application use tracking	commit \| commitdiff \| tree
2009-06-01	jprocter	look in database references for more ID strings to...	commit \| commitdiff \| tree
2009-06-01	jprocter	apply method for a NodeTransform to nodes in a tree	commit \| commitdiff \| tree
2009-06-01	jprocter	javadoc	commit \| commitdiff \| tree
2009-06-01	jprocter	only make a link menu when there are links	commit \| commitdiff \| tree
2009-06-01	jprocter	maxcolour is default colour for no-score features	commit \| commitdiff \| tree
2009-04-14	jprocter	bugfix autobuild of release branch	commit \| commitdiff \| tree
2009-04-14	jprocter	bugfix autobuild of release branch	commit \| commitdiff \| tree
2009-04-14	jprocter	patch to fix occasional arrayoutofbounds exception...	commit \| commitdiff \| tree
2009-04-07	jprocter	documented fix to sequencefetcher for multiple ID retrieval	commit \| commitdiff \| tree
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	commit \| commitdiff \| tree
2009-04-04	jprocter	rejigged jmol check thread to run prior to data loading...	commit \| commitdiff \| tree
2009-03-31	jprocter	note on new popup menu in feature settings dialog	commit \| commitdiff \| tree
2009-03-31	jprocter	added feature gradient colours and sortby feature score...	commit \| commitdiff \| tree
2009-03-31	jprocter	prototype for store/restore of feature colour gradient...	commit \| commitdiff \| tree
2009-03-31	jprocter	todo	commit \| commitdiff \| tree
2009-03-17	jprocter	allow configuration of graduated colour	commit \| commitdiff \| tree
2009-03-17	jprocter	quantitative shading of features by GraduatedColor	commit \| commitdiff \| tree
2009-03-17	jprocter	prototype dialog for setting feature display shading...	commit \| commitdiff \| tree
2009-03-17	jprocter	holds shading and range parameters rendering a feature...	commit \| commitdiff \| tree
2009-03-17	jprocter	sortbytree view setting and action added - setting...	commit \| commitdiff \| tree
2009-03-17	jprocter	sortbytree/nosortbytree and defprop arguments. (defprop...	commit \| commitdiff \| tree
2009-03-17	jprocter	new sortbytree default config property	commit \| commitdiff \| tree
2009-03-17	jprocter	sortbytree parameter added and undo re-instated for...	commit \| commitdiff \| tree
2009-03-17	jprocter	fixes launchApp bug where user defined colourscheme...	commit \| commitdiff \| tree
2009-02-24	jprocter	better tooltip display and placement, cope with linkOnly...	commit \| commitdiff \| tree
2009-02-24	jprocter	debugging selection message send/receive	commit \| commitdiff \| tree
2009-02-24	jprocter	only display unique url links (both in label and in...	commit \| commitdiff \| tree
2009-02-24	jprocter	bugfix for occasional nullpointer exceptions when selecting...	commit \| commitdiff \| tree
2009-02-24	jprocter	change method signature to allow caller to test if...	commit \| commitdiff \| tree
2009-02-24	jprocter	bugfix the bugfix	commit \| commitdiff \| tree
2009-02-24	jprocter	allow label to be set independently of parsed input...	commit \| commitdiff \| tree
2009-02-24	jprocter	bug fixes (infinite loop when fetcher given same sequence...	commit \| commitdiff \| tree
2009-02-06	jprocter	updated jalview reference	commit \| commitdiff \| tree
2009-02-06	jprocter	updated binding	commit \| commitdiff \| tree
2009-02-06	jprocter	fix occasional nullpointer ref when seq ID retrieval...	commit \| commitdiff \| tree
2009-02-06	jprocter	showUnconserved and updated reference	commit \| commitdiff \| tree
2009-02-06	jprocter	showunconserved preference	commit \| commitdiff \| tree
2009-02-06	jprocter	showUnconserved group attribute	commit \| commitdiff \| tree
2009-02-06	jprocter	showUnconserved IO	commit \| commitdiff \| tree
2009-02-06	jprocter	showUnconserved view and group setting	commit \| commitdiff \| tree
2009-02-06	jprocter	show unconserved gui and annotation file attribute	commit \| commitdiff \| tree
2009-02-06	jprocter	added showUnconserved property to group and view attributes	commit \| commitdiff \| tree
2009-01-09	jprocter	hack to completely disable calculation of consensus...	commit \| commitdiff \| tree
2009-01-09	jprocter	bugfix	commit \| commitdiff \| tree
2009-01-08	jprocter	fix broken parsing of non-positional features in GFF...	commit \| commitdiff \| tree
2009-01-08	jprocter	structure ids are not IDs, but simply references	commit \| commitdiff \| tree
2009-01-08	jprocter	refactor	commit \| commitdiff \| tree
2009-01-07	jprocter	added links to the das settings help, and explanation...	commit \| commitdiff \| tree
2009-01-07	jprocter	ensure that the DAS sequence source checkbox is checked...	commit \| commitdiff \| tree
2009-01-07	jprocter	check for features on the retrieved sequences	commit \| commitdiff \| tree
2009-01-07	jprocter	refactor	commit \| commitdiff \| tree
2009-01-07	jprocter	added higher level method to enable the display of...	commit \| commitdiff \| tree
2008-12-19	jprocter	justify cannot be undone - commented out menu items...	commit \| commitdiff \| tree
2008-12-19	jprocter	experimental: sort by feature UI in feature settings...	commit \| commitdiff \| tree
2008-12-19	jprocter	new sort by length method, justify edit menu entries...	commit \| commitdiff \| tree
2008-12-19	jprocter	catch null pointer exception when no colourscheme is...	commit \| commitdiff \| tree
2008-12-19	jprocter	simple transformation of feature types like dbref and...	commit \| commitdiff \| tree
2008-12-19	jprocter	todo	commit \| commitdiff \| tree
2008-12-19	jprocter	wsdbfetch parameter change again (uniprotkb is dbname...	commit \| commitdiff \| tree
2008-12-19	jprocter	avoid null pointer exception when no features visible	commit \| commitdiff \| tree
2008-12-19	jprocter	avoid null pointer exception when groupName is not set	commit \| commitdiff \| tree
2008-12-19	jprocter	left and right justify method	commit \| commitdiff \| tree
2008-12-19	jprocter	sort by length	commit \| commitdiff \| tree
2008-12-15	jprocter	added (and enabled) switch to store gff source string...	commit \| commitdiff \| tree
2008-12-15	jprocter	temporary fix and note about null feature group mucking...	commit \| commitdiff \| tree
2008-12-15	jprocter	warning for failed parsing of newick strings	commit \| commitdiff \| tree
2008-12-15	jprocter	new callback handler allowing threads that request...	commit \| commitdiff \| tree
2008-12-15	jprocter	structureState element to structure view Id is a many...	commit \| commitdiff \| tree
2008-12-08	jprocter	DAS feature scores are parsed into floats on sequence...	commit \| commitdiff \| tree
2008-12-08	jprocter	output average score to stdout	commit \| commitdiff \| tree
2008-12-08	jprocter	display feature score in tooltip	commit \| commitdiff \| tree
2008-12-08	jprocter	order by feature documentation	commit \| commitdiff \| tree
2008-12-08	jprocter	experimental buttons for sort on score/density and...	commit \| commitdiff \| tree
2008-12-08	jprocter	new sort functions for ordering sequence by annotated...	commit \| commitdiff \| tree
2008-12-05	jprocter	added location of menu option and keystroke	commit \| commitdiff \| tree
2008-12-05	jprocter	support for multiple accession retrieval from a database...	commit \| commitdiff \| tree
2008-12-04	jprocter	added local das sequence source CLI and documentation	commit \| commitdiff \| tree
2008-12-04	jprocter	fetch database references for all EBI db + selected...	commit \| commitdiff \| tree
2008-12-04	jprocter	sequence fetchers generated for local das sequence...	commit \| commitdiff \| tree
2008-12-04	jprocter	das source browser uses local source method from jalview...	commit \| commitdiff \| tree
2008-12-04	jprocter	allow sequence source to be specified as sequence:http...	commit \| commitdiff \| tree
2008-12-04	jprocter	local das source properties string constants and routine...	commit \| commitdiff \| tree
2008-12-04	jprocter	properly catch exceptions from querying server with...	commit \| commitdiff \| tree
2008-12-04	jprocter	minimise exceptions for bad uniprot ids	commit \| commitdiff \| tree
2008-12-04	jprocter	select source by implementation class	commit \| commitdiff \| tree
2008-12-04	jprocter	fix null pointer exception for sources which don't...	commit \| commitdiff \| tree
2008-12-04	jprocter	clarity of tree menu calculation widget name	commit \| commitdiff \| tree
2008-12-01	jprocter	match case switch should work for both sequence ID...	commit \| commitdiff \| tree
2008-11-12	jprocter	beginning documentation for new hidecol/hiderep and...	commit \| commitdiff \| tree
2008-11-12	jprocter	todo for documenting selection sharing	commit \| commitdiff \| tree
2008-11-12	jprocter	autoscroll option	commit \| commitdiff \| tree
2008-11-12	jprocter	new capabilities and note on 'try vamsas'	commit \| commitdiff \| tree
2008-11-12	jprocter	new features/resolved for 2.4.1.	commit \| commitdiff \| tree
2008-11-12	jprocter	refactored to propery separate addToDocument,addFromDocument...	commit \| commitdiff \| tree
2008-11-12	jprocter	new viewport IDs and jalview XML storage/sync in vamsas...	commit \| commitdiff \| tree
2008-11-12	jprocter	selection sending and receiving, autoscrolling to highlighte...	commit \| commitdiff \| tree
2008-11-12	jprocter	selection sending and receiving, autoscrolling to highlighte...	commit \| commitdiff \| tree
2008-11-12	jprocter	selection sending	commit \| commitdiff \| tree
2008-11-12	jprocter	new ID constructor and selection sending	commit \| commitdiff \| tree
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