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Merge branch 'fix_JAL-1423' into Release_2_8_1_Branch
2014-01-07 Jim ProcterMerge branch 'fix_JAL-1423' into Release_2_8_1_Branch
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2014-01-07 Jim ProcterJAL-1423 - console error reporting and graceful handling...
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into testMerge
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 update manifest in the JmolApplet jar
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 disable 'Permissions' in manifest to see if...
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim Proctersandbox permissions
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2013-11-26 Jim Procternew required parameter for deploying the applet
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2013-11-26 Jim ProcterMerge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26 Jim ProcterJAL-1400 add codebase and caller allowable codebase
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2013-11-25 Jim ProcterJAL-1139 add SHA1WithRSA for applet signjar
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 specified SHA1WithRSA for sig algorithm and...
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2013-11-25 Jim Procteradivce from http://ant.apache.org/manual/Tasks/signjar...
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 need to explicitly specify SHA1 for java 6...
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 supress dependency warnings from proguard
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25 Jim ProcterMerge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25 Jim ProcterJAL-1139 latest version of proguard needed for Java...
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2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_Branch
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2013-11-07 Jim ProcterMerge branch 'JAL-1286' into Release_2_8_1_Branch
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2013-11-07 Jim ProcterJAL-1286 additional tests to ensure that non-GZ files...
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2013-11-07 Jim ProcterJAL-1286 check if local file ends with .gz and opens...
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2013-11-07 Jim ProcterJAL-1286 test input of gzip stream from local file
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2013-11-05 Jim ProcterJAL-1400 found a fix for the sandbox exception - need...
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2013-11-05 Jim Procterexperiment with reinstating the sandbox permissions
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2013-11-05 Jim ProcterJAL-1400 try putting explicit domain for jalviewLite...
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2013-11-05 Jim ProcterJAL-1400 Always create indices for jar before signing
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2013-11-05 Jim ProcterJAL-1400 sign everything !
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2013-11-05 Jim ProcterJAL-1400 explicit security settings for applet
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2013-11-05 Jim ProcterJAL-1400 explicit security permissions for Desktop
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2013-10-17 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch
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2013-10-17 Jim Procterfix for JAL-1398 - original colourscheme is enabled...
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2013-10-17 Jim ProcterJAL-1233 TODO concerning the way we propagate annotation...
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2013-10-17 Jim ProcterJAL-1397 make sure annotation colourscheme is up to...
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2013-10-17 Jim ProcterJAL-1397 store colour by sequence and originalColour...
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2013-10-17 Jim ProcterJAL-1397 make sure ColourschemeI instances are up to...
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2013-10-17 Jim ProcterJAL-1397 propagate any consensus/conservation colourscheme...
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2013-10-17 Jim ProcterJAL-1397 getters for originalColours flag
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2013-10-16 Jim ProcterMerge branch 'JAL-1395' into Release_2_8_1_Branch
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2013-10-16 Jim ProcterJAL-1395 do not calculate non-gap consensus when no...
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2013-10-11 Jim ProcterMerge branch 'JAL-1292_regression' into Release_2_8_1_Branch
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2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start...
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2013-10-11 Jim ProcterJAL-1114 javadoc
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2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable fields...
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2013-10-11 Jim ProcterJAL-1114 API javadoc
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2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences...
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2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface
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2013-10-11 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2_8_1_...
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2013-10-11 Jim ProcterJAL-1354 watch for exceptions when initialising (Security...
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2013-10-11 Jim ProcterJAL-1354 ensure resource bundles are copied into JalviewAppl...
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2013-10-08 Jim Procterreindexed Jmol jar with 'jar -i' to fix JAL-1389
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2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2_8_1_...
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2013-10-08 Jim Procterlocalisation for JAL-1384 and JAL-1388
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2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2013-10-08 Jim ProcterMerge branch 'JAL-643_JAL-1384' into Release_2_8_1_Branch
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2013-10-08 Jim ProcterJAL-1384 JAL-1388 revised popup menu documentation...
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2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu
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2013-10-08 Jim Procterfix for JAL-1387
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2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for...
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2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl...
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2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController
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2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
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2013-10-07 Jim ProcterJAL-1385 expose core view model methods in interface
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2013-10-07 Jim ProcterJAL-1385 Alignment view controller logic implementation...
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2013-10-05 Jim ProcterMerge branch 'JAL-1378_jb2.1cli' into Release_2_8_1_Branch
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2013-10-05 Jim ProcterJAL-1379 graceful degradation to legacy service when...
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2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore...
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2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary...
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2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto...
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2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries...
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2013-10-04 Jim ProcterJAL-1383 - disable startup of the Envision2 workflow...
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2013-10-04 Jim ProcterJAL-940 JAL-1378 EOL comment on JWS v1 services
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2013-10-04 Jim Procterupdate JABA client dependency in InstallAnywhere build
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2013-10-04 Jim ProcterMerge branch 'RNAalifold' into Release_2_8_1_Branch
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2013-10-04 Jim Procterfix for JAL-1380 and efficiency todo for JAL-1381
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2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA...
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2013-09-25 Jim ProcterJAL-1365 test that RNAAliFold service settings are...
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2013-09-25 Jim Procterformatting
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2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold...
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2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metadata...
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2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and...
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2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous...
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2013-09-25 Jim ProcterJAL-1270 nominal jalview version string for projects...
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2013-09-25 Jim ProcterJAL-1270 Desktop.instance is null during headless jalview...
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2013-09-20 Jim Procterformatting
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2013-09-18 Jim ProcterJAL-1355 - fix compilation errors: typos and missing...
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2013-09-13 Jim Proctertweak - v is lowercase in Jalview
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2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold
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2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch
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