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2005-03-30	jprocter	fixed the log4j messages.	commit \| commitdiff \| tree
2005-03-30	jprocter	cleaned up some comments and exception messages.	commit \| commitdiff \| tree
2005-03-30	jprocter	Updated version of axis to fix the j1.5 webstart problems.	commit \| commitdiff \| tree
2005-03-30	jprocter	Fixed a sensible default leaf distance (for files where...	commit \| commitdiff \| tree
2005-03-18	jprocter	rough JPredService client copied from WebServices project.	commit \| commitdiff \| tree
2005-03-18	jprocter	various loadTree bits for loading and saving trees.	commit \| commitdiff \| tree
2005-03-18	jprocter	merged Loadtree and EPSfile and changed crlf.	commit \| commitdiff \| tree
2005-03-18	jprocter	Save tree.	commit \| commitdiff \| tree
2005-03-18	jprocter	Load and Save trees.	commit \| commitdiff \| tree
2005-03-18	jprocter	Tree io modifications, including support for polytomous...	commit \| commitdiff \| tree
2005-03-18	jprocter	New constructors for turning NewickFile objects into...	commit \| commitdiff \| tree
2005-03-17	jprocter	Newick/New Hampshire tree format parser and generator.	commit \| commitdiff \| tree
2005-03-08	jprocter	fixed interface for PID method.	commit \| commitdiff \| tree
2005-03-08	jprocter	fixed so that alignment percentage ID is used for distance...	commit \| commitdiff \| tree
2005-03-08	jprocter	fixed signing bug (also updated to latest javahelp...	commit \| commitdiff \| tree
2005-03-08	jprocter	more precise methods information in help description.	commit \| commitdiff \| tree
2005-03-08	jprocter	fixed some of the jar/wsdl deployment problems.	commit \| commitdiff \| tree
2005-03-08	jprocter	removed conservation calculation from calculations.	commit \| commitdiff \| tree
2005-03-01	jprocter	Obsolete. Explanation within the conservation colourscheme...	commit \| commitdiff \| tree
2005-02-28	jprocter	added uniquify sequence id assertion.	commit \| commitdiff \| tree
2005-02-28	jprocter	partial implementation of JNet server prediction.	commit \| commitdiff \| tree
2005-02-28	jprocter	first stab at a JPredClient.	commit \| commitdiff \| tree
2005-02-23	jprocter	basic jpred concise prediction reader.	commit \| commitdiff \| tree
2005-02-23	jprocter	new resources location.	commit \| commitdiff \| tree
2005-02-23	jprocter	rearranged project structure	commit \| commitdiff \| tree
2005-02-23	jprocter	making Jemboss client more configurable.	commit \| commitdiff \| tree
2005-02-23	jprocter	bug fix for unaligned sequence sets and clustal colours...	commit \| commitdiff \| tree
2005-02-23	jprocter	rearranged project structure	commit \| commitdiff \| tree
2005-02-23	jprocter	new ant build for Jalview.	commit \| commitdiff \| tree
2005-02-08	jprocter	formatting imports.	commit \| commitdiff \| tree
2005-01-15	jprocter	JBuilder Project file update	commit \| commitdiff \| tree
2005-01-15	jprocter	Jemboss(emboss 2.9.0) classes to provide client functionality to	commit \| commitdiff \| tree
2005-01-15	jprocter	first jemboss clustalw client for jalview.	commit \| commitdiff \| tree
2005-01-15	jprocter	support for jemboss server interaction.	commit \| commitdiff \| tree
2005-01-15	jprocter	bugfix for writing fasta file without gap characters.	commit \| commitdiff \| tree
2005-01-15	jprocter	Implemented clustal alignment via jemboss.	commit \| commitdiff \| tree
2005-01-12	jprocter	random change 3	commit \| commitdiff \| tree
2005-01-12	jprocter	another dummy.	commit \| commitdiff \| tree
2005-01-12	jprocter	irrelevant comment.	commit \| commitdiff \| tree

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