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2013-05-24	Jim Procter	fix for JAL-1297: COMBINE output now follows specification...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	javadoc and formatting	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1297 JAL-1295 JAL-1294 sensible toString for benefit...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1297 JAL-1295 JAL-1294 improve test logic for comparing...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1296 reinstated tab characters so example annotation...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1070 - [ not a real patch ] - include offending...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-966 paintrefresher should be abstract [ Merge branch...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1161 conditional parameters for controlling clipping	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1292 avoid exception by using bitset of arbitrary...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1161 changed signature to allow clipping bounds...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	formatting	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1161 only trigger an annotation repaint in unwrapped...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1161 enable fastPaint for nudges from scroll bars...	commit \| commitdiff \| tree
2013-05-24	Jim Procter	JAL-1161 stick to api	commit \| commitdiff \| tree
2013-05-24	Jim Procter	typo	commit \| commitdiff \| tree
2013-05-21	Jim Procter	Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-05-21	Jim Procter	split test for general Stockholm IO consistency (JAL...	commit \| commitdiff \| tree
2013-05-21	Jim Procter	JAL-1199 JAL-1272 remove main() method from test class	commit \| commitdiff \| tree
2013-05-21	Jim Procter	formatting	commit \| commitdiff \| tree
2013-05-21	Jim Procter	JAL-1199 JAL-1272 refactored Natasha's test to a generic...	commit \| commitdiff \| tree
2013-05-13	Jim Procter	Merge branch 'JAL-1289_initCallBack' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-05-13	Jim Procter	JAL-1289 call oninit callback even if no alignment...	commit \| commitdiff \| tree
2013-04-12	Jim Procter	Merge branch 'JAL-1286_gzip' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-04-12	Jim Procter	JAL-1286 URL stream reader tries to use a GZIPInputStream...	commit \| commitdiff \| tree
2013-02-06	jprocter	Merge branch 'Release_2_8_Branch' into JAL-1199-Stk_writing	commit \| commitdiff \| tree
2013-02-06	jprocter	Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-02-06	jprocter	JAL-1265 basic support for parsing database accessions...	commit \| commitdiff \| tree
2013-02-06	jprocter	JAL-1199 added test for Rfam Stockholm file example	commit \| commitdiff \| tree
2013-02-06	jprocter	JAL-1199 refactored stockholm test code from main class...	commit \| commitdiff \| tree
2013-02-05	jprocter	Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-02-05	jprocter	formatting	commit \| commitdiff \| tree
2013-02-05	jprocter	Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-01-20	jprocter	Merge branch 'Dbfetch_hotfix-JAL-1238' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-01-18	jprocter	JAL-1238 test to see if the primary Uniprot source...	commit \| commitdiff \| tree
2013-01-18	jprocter	JAL-1238 order to place primary sources before lower...	commit \| commitdiff \| tree
2013-01-18	jprocter	JAL-1238 method to test if DAS source is a primary...	commit \| commitdiff \| tree
2013-01-18	jprocter	JAL-1238 tier index indicating distance of a source...	commit \| commitdiff \| tree
2013-01-18	jprocter	Merge branch 'JAL-1254-hotfix' into Release_2_8_Branch	commit \| commitdiff \| tree
2013-01-18	jprocter	JAL-1255 don't show 'Right click to add annotations...	commit \| commitdiff \| tree
2013-01-18	jprocter	JAL-1254 patch for NPE in annotation renderer when...	commit \| commitdiff \| tree
2012-12-11	jprocter	JAL-1217 check and avoid NPE if no datastore object...	commit \| commitdiff \| tree
2012-12-11	jprocter	JAL-1217 report exception for service when no datastore...	commit \| commitdiff \| tree
2012-11-21	jprocter	valid URLs in website menu frame and fixed GA code	commit \| commitdiff \| tree
2012-11-17	jprocter	Merge branch 'master' into Release_2_8_Branch	commit \| commitdiff \| tree
2012-11-12	jprocter	Merge branch 'Release_2_8_Branch'	commit \| commitdiff \| tree
2012-11-12	jprocter	final tweaks to help landing page	commit \| commitdiff \| tree
2012-11-12	jprocter	Merge branch 'Release_2_8_Branch'	commit \| commitdiff \| tree
2012-11-12	jprocter	update footer for static page	commit \| commitdiff \| tree
2012-11-12	jprocter	Merge branch 'Release_2_8_Branch'	commit \| commitdiff \| tree
2012-11-12	jprocter	tidy help	commit \| commitdiff \| tree
2012-11-09	jprocter	property to configure webstart image	commit \| commitdiff \| tree
2012-11-09	jprocter	tweak file association comment and make sure webstart...	commit \| commitdiff \| tree
2012-11-09	jprocter	push jalview v2.8 release date to monday 12th November	commit \| commitdiff \| tree
2012-11-09	jprocter	ga tracking, footers and footer link styles	commit \| commitdiff \| tree
2012-11-09	jprocter	more tweaking of static pages and rejigging applet...	commit \| commitdiff \| tree
2012-11-09	jprocter	tweak whats new again	commit \| commitdiff \| tree
2012-11-09	jprocter	tweaking welcome message and what's new	commit \| commitdiff \| tree
2012-11-09	jprocter	constructor takes settings from any existing feature...	commit \| commitdiff \| tree
2012-11-08	jprocter	JAL-1193 ensure the 'loadedComplete' method gets called...	commit \| commitdiff \| tree
2012-11-08	jprocter	update release notes for JAL-1202	commit \| commitdiff \| tree
2012-11-08	jprocter	remember to close input file!	commit \| commitdiff \| tree
2012-11-08	jprocter	tidy imports	commit \| commitdiff \| tree
2012-11-08	jprocter	embed links to major features in main page	commit \| commitdiff \| tree
2012-11-08	jprocter	tweak wording	commit \| commitdiff \| tree
2012-11-07	jprocter	patch broken link	commit \| commitdiff \| tree
2012-11-07	jprocter	and more tweaks.	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 more layout tweaks	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 tweak layout for applet page and allow monospace...	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 more tweaks to page layout	commit \| commitdiff \| tree
2012-11-07	jprocter	Jalview 2.8 release notes and whats new! text	commit \| commitdiff \| tree
2012-11-07	jprocter	updated release notes for Jalview Version 2.8	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-1201 update pages to use new website design	commit \| commitdiff \| tree
2012-11-07	jprocter	JAL-957 manual update to applet authorlist - need to...	commit \| commitdiff \| tree
2012-10-31	jprocter	Merge branch 'Release_2_8_Branch' of https://source...	commit \| commitdiff \| tree
2012-10-31	jprocter	JAL-1130 fix gif palette (arggh!)	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 nice installer splashscreens and...	commit \| commitdiff \| tree
2012-10-30	jprocter	Merge branch 'Release_2_8_Branch' of https://source...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 fireworks editable huge jalview logo in RGB	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 update install anywhere installer...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 JAL-1197 update install anywhere installer...	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 updated installAnywhere program logos	commit \| commitdiff \| tree
2012-10-30	jprocter	JAL-1130 preserved old installAnywhere installer logo...	commit \| commitdiff \| tree
2012-10-29	jprocter	JAL-1130 made background transparent for small logo...	commit \| commitdiff \| tree
2012-10-24	jprocter	JAL-1193 call setLoadingFromArchiveFinished(true) for...	commit \| commitdiff \| tree
2012-10-24	jprocter	JAL-1193 patch prevents JalviewJmolBinding from handling...	commit \| commitdiff \| tree
2012-10-22	jprocter	Jalview 2.8 Source Header	commit \| commitdiff \| tree
2012-10-04	jprocter	Merge branch 'develop' into Release_2_8_Branch	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-636 switch to simple REST interface to dbfetch...	commit \| commitdiff \| tree
2012-10-04	jprocter	avoid importing the mapping every time we parse a uniprot...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-636 tweak main() based test to allow DAS sources...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-1188 - set the user agent to Jalview Desktop/$...	commit \| commitdiff \| tree
2012-10-04	jprocter	JAL-1064 JAL-671 make sure all buttons are disabled...	commit \| commitdiff \| tree
2012-10-03	jprocter	formatting	commit \| commitdiff \| tree
2012-10-03	jprocter	update release branch to v2.8	commit \| commitdiff \| tree
2012-10-03	jprocter	formatting	commit \| commitdiff \| tree
2012-10-03	jprocter	JAL-1026 - insert a sensible default for proxy so Jalview...	commit \| commitdiff \| tree
2012-10-03	jprocter	JAL-1183 JAL-343 - use dialog queue for JABA warning...	commit \| commitdiff \| tree
2012-10-02	jprocter	JAL-1185 patch NPE - create new group for subtree on...	commit \| commitdiff \| tree
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