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JAL-2805 viewport is passed along to the tree parser
2017-10-26 Jim ProcterJAL-2698 update version and cut release branch
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2017-10-26 Jim ProcterJAL-2546 release notes
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2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecoverExpan...
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2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop
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2017-10-26 Jim ProcterJAL-2036 2.10.3 release notes
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2017-10-26 Jim ProcterJAL-2793 cancelling font changed dialog didn't call...
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2017-10-26 Jim ProcterJAL-2548 release notes
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2017-10-26 Jim ProcterMerge branch 'bug/JAL-2776toggleGroupColour' into develop
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2017-10-26 Jim ProcterJAL-2684 JAL-2685 release notes
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2017-10-26 Jim ProcterJAL-2685 tidy up html doc
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2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into...
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2017-10-26 Jim ProcterJAL-2392 test asserts for progressbar creation on the...
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2017-10-25 Jim ProcterJAL-2617 release notes
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2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop
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2017-10-25 Jim ProcterJAL-2636 release notes
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2017-10-25 Jim ProcterJAL-2667 release notes
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2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop
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2017-10-25 Jim ProcterJAL-2727 release notes
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2017-10-25 Jim ProcterJAL-2727 add not to Test failed message recommending...
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2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into...
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2017-10-25 Jim ProcterJAL-2732 JAL-1900 JAL-1625 release notes
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2017-10-25 Jim ProcterMerge branch 'bugs/JAL-2779_osx_dialogsequencingbroke...
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2017-10-25 Jim ProcterJAL-2779 remove empty block and if statement
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2017-10-25 Jim ProcterJAL-2790 JAL-2392 release notes
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2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
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2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon...
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2017-10-25 Jim ProcterJAL-2392 auto boxing rather than explicit Long as key
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2017-10-24 Jim ProcterJAL-2495 release notes
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2017-10-24 Jim ProcterJAL-2643 JAL-2524 release notes
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2017-10-24 Jim ProcterJAL-2524 release notes
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2017-10-24 Jim ProcterJAL-2733 JAL-2658 release notes
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2017-10-24 Jim ProcterJAL-1980 release notes (retrodoc for 2.10.0)
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2017-10-24 Jim ProcterJAL-2687 JAL-2608 release notes
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2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into...
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2017-10-24 Jim ProcterJAL-2542 release notes
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2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
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2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and...
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2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
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2017-10-23 Jim ProcterJAL-2768 release notes
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2017-10-23 Jim ProcterJAL-2739 release notes
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2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop
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2017-10-23 Jim ProcterJAL-2682 release notes
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2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop
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2017-10-23 Jim ProcterJAL-2253 release notes
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2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop
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2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager...
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2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not needed...
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2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into...
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2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available
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2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection...
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2017-10-20 Jim ProcterJAL-547 PID script in release notes
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2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into...
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2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score...
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2017-10-18 Jim ProcterJAL-2779 switch order for updating the current alignment...
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2017-10-18 Jim ProcterJAL-2779 remove dead code
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2017-10-18 Jim ProcterJAL-2779 hook in our own AquaInternalFrameManager when...
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2017-10-18 Jim ProcterJAL-2779 JAL-1551 source formatting
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2017-10-18 Jim ProcterJAL-2779 patch so closing most recent frame doesn’t...
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2017-10-18 Jim ProcterJAL-2779 original version of AquaInternalFrame Manager
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2017-10-18 Jim ProcterJAL-2782 remark about possible exception due to unsafe...
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2017-10-18 Jim ProcterJAL-2777 JAL-2773 release notes
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2017-10-18 Jim ProcterMerge branch 'bugs/JAL-2777_whitespaceChain' into develop
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2017-10-18 Jim ProcterJAL-2777 remove duplicate code outside conditional...
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2017-10-17 Jim ProcterJAL-2777 release notes
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2017-10-17 Jim ProcterMerge branch 'features/JAL-2773_dontalwaysrecolourstructureo...
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2017-10-17 Jim ProcterJAL-2773 renamed flags for clarity
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2017-10-17 Jim ProcterJAL-2777 patch for whitespace chain
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2017-10-17 Jim ProcterJAL-2777 test for the whitespace chain
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2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of...
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2017-10-17 Jim ProcterJAL-2481 test correct behaviour of findFeatureColour...
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2017-10-17 Jim ProcterJAL-2777 noticed exception raised on construction of...
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2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview...
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2017-10-11 Jim ProcterJAL-2757 release notes
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2017-10-10 Jim ProcterJAL-2392 wrap public progress bar methods as InvokeLater...
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2017-10-10 Jim ProcterJAL-2392 formatting
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2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_jalvie...
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2017-10-10 Jim ProcterJAL-2523 release notes
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2017-10-10 Jim ProcterMerge branch 'features/JAL-2523httpRetries' into develop
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2017-10-09 Jim ProcterMerge branch 'patch/JAL-2446_mergeconflictmissed' into...
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2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method.
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2017-10-06 Jim ProcterMerge branch 'patch/JAL-2116_java9_antjnlpfix' into...
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2017-10-06 Jim ProcterJAL-2116 fix jnlp file post-processing so java 9 module...
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2017-10-05 Jim ProcterJAL-2757 reset textbox after a non HTTP 200 response
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2017-10-03 Jim ProcterMerge branch 'releases/Release_2_10_2b1_Branch' into...
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2017-10-01 Jim ProcterMerge branch 'documentation/JAL-2751patch2102b2' into...
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2017-10-01 Jim ProcterJAL-2751 what's new for 2.10.2b2 patch
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2017-10-01 Jim ProcterJAL-2751 patch release notes
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2017-09-30 Jim ProcterJAL-2751 bump version and new releases entry
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2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
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2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
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2017-09-29 Jim ProcterJAL-2745 patch tests for https
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2017-09-29 Jim ProcterJAL-2748 formatting
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2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
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2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
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2017-09-29 Jim ProcterJAL-2745 patch tests for https
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2017-09-29 Jim ProcterJAL-2748 formatting
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2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
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2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
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2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
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2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
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