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remove contaminant imports
2012-08-28 jprocterremove contaminant imports
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2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documentation...
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2012-08-28 jprocterformatting
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2012-08-28 jprocterJAL-1066 basic gui and functionality for per-sequence...
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2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associated...
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2012-08-28 jprocterformatting
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2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with...
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2012-08-28 jprocterJAL-974 create mixture of sequence features marking...
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2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from...
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2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server errors...
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2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated...
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2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service...
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2012-08-28 jprocterjavadoc and note about broken semantics for findIndex
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2012-08-28 jprocterJAL-1149 patch
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2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation...
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2012-08-24 jprocterJAL-1087 skip processing any of the other command line...
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2012-08-24 jprocterJAL-1143 - ensure we revalidate annotation panel height...
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2012-08-23 jprocterJAL-975 JAL-951 test class for viewing layout for JABAWS...
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2012-08-07 jprocterJAL-1137 clean up old-style menu code and look
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2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service...
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2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
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2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client...
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2012-08-05 jprocterJAL-1131 - todos for later versions
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2012-08-05 jprocterJAL-1131 ensure new dataset sequence is created if...
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2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotation...
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2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignment...
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2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params
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2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content...
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2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across...
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2012-08-03 jprocterJAL-1136 less code-dependent formula for creating server...
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2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container...
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2012-08-03 jprocterJAL-1115 reference to List<SequenceI> passed in 'alignment...
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2012-08-02 jprocterJAL-976 better logging/error reporting for disorder...
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2012-08-02 jprocterJAL-976 JAL-958 todo list for release
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2012-08-01 jprocterJAL-976 ensure protein disorder services appears in...
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2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws services...
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2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f941162e8b...
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2012-07-08 jprocterdocumentation for PCA calculation parameters and reset...
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2012-07-08 jproctera209409239 (JAL-976 - add support for storing service...
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2012-07-08 jprocterJAL-976 clean out associated annotation
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2012-07-08 jprocterJAL-976 implement additional calcId method
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2012-07-08 jprocterJAL-976 simpler parameter update model
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2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for parameter...
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2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associated...
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2012-07-08 jprocterJAL-976 pick an available instance of a service based...
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2012-07-08 jprocterbugfix - use currently held parameters
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2012-07-08 jprocterJAL-976 - storing service parameters on the view model
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2012-07-06 jprocterJAL-976 test if the sliders have been modified from...
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2012-07-06 jprocterunique URI for service type
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2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calculation...
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2012-07-06 jproctertidy imports
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2012-07-06 jprocterJAL-976 - add support for storing service parameter...
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2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
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2012-07-03 jprocterJAL-974 - broken copy of feature settings
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2012-07-02 jprocterJAL-1129 progress bar - this patch doesn't provide...
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2012-07-02 jprocterJAL-968 incremental - PNG/EPS output has annotation...
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2012-07-02 jproctertidy imports
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2012-07-02 jprocterJAL-974 create graduated feature colours for annotation...
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2012-07-02 jprocterJAL-974 - use refactored methods on AlignmentPanel
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2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to AlignmentP...
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2012-07-01 jprocterJAL-1117 alleviate lock starvation
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2012-07-01 jprocterensure all annotation dependent rendering gets refreshed
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2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes...
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2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for...
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2012-06-26 jprocterJAL-899 added groovy support to develop branch
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2012-06-20 jprocterformatting
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2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing parameters...
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2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons parameters...
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2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped...
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2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save current...
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2012-06-19 jprocterpatch for JAL-1172 ensure option's default value is...
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2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of workers...
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2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignment...
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2012-06-15 jprocterformatting
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2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace...
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2012-06-15 jprocterfix JAL-1122
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2012-06-15 jprocterJAL-1123 - make clear where off-by-one error was occuring...
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2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel
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2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel.
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2012-06-15 jprocterJAL-1120 patch for desktop
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2012-06-15 jprocterpatch for JAL-1121 - reset button and slightly wider...
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2012-06-15 jprocterJAL-535 refactoring todo
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2012-06-15 jprocterExtended IProgressIndicator with method to check if...
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2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
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2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually...
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2012-06-14 jprocterJAL-1115 - synchronized access to group list
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2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to...
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2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new...
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2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignment...
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2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is registered...
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2012-06-14 jprocterformatting
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2012-06-14 jprocterformatting
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2012-06-14 jprocterJAL-1118 - hack to try and get rid of flicker. consider...
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2012-06-14 jprocterJAL-1118 WIP - flag to mark if image buffer has just...
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2012-06-14 jprocterJAL-1115 trap exception arising from race condition...
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2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of...
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2012-06-14 jprocterJAL-961 ensure we only add one instance of a worker...
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2012-06-14 jprocterJAL-961 potentially helpful println statements when...
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2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from...
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2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs
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