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convenience method for performing pairwise alignment
2012-03-01
jprocter
(JAL-842) ensure deletions are accounted for when highlighti...
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2012-03-01
jprocter
(JAL-893) update to VARNAv3.9-dev version
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2012-03-01
jprocter
Merge branch 'Release_2_7_Branch' into develop
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2012-03-01
jprocter
debug local source management buttons and formatting
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tree
2012-03-01
jprocter
revised version of Jdas with simpler connectionPropertyProvi...
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2012-02-29
jprocter
update to latest build
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2012-02-29
jprocter
move from dasobert to jdas multithreaded feature fetching...
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2012-02-29
jprocter
tidy imports and switch over to use das source registry API
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2012-02-29
jprocter
tidy imports
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tree
2012-02-29
jprocter
fallout from refactoring registry datamodel to a sourceRegis...
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2012-02-29
jprocter
(JAL-972) replaced biodas with jdas sources datastructures...
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2012-02-29
jprocter
refactoring dassequencesource code fallout
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2012-02-29
jprocter
refactored das sequence source creation code to the...
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2012-02-29
jprocter
removed excess imports
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2012-02-29
jprocter
updated das sequence source for jdas client and refactored...
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2012-02-29
jprocter
JAL-972 - refactored local source builder to registry...
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2012-02-29
jprocter
JAL-966 todo for jalview 3 api
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2012-02-29
jprocter
jalview das registry and source api and jdas specific...
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2012-02-29
jprocter
jdas runtime dependencies
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2012-02-29
jprocter
updated build of jdas
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2012-02-29
jprocter
jdas doesn't need a listener for das sequence retrieval...
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2012-02-13
jprocter
groovy nature not needed in project
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2012-02-13
jprocter
remove dead imports
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tree
2012-02-13
jprocter
(JAL-972) relative refs for libraries and some additional...
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2012-02-13
jprocter
(JAL-972) jdas source retrieval and use of jdas structures...
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2012-02-13
jprocter
(JAL-972) updated jdas to latest version includign...
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2012-02-13
jprocter
change over source attribute datamodel
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tree
2012-02-13
jprocter
removed all dasobert code and begun to replace with...
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2012-02-12
Jim Procter
(JAL-1016) noted position where race condition occurs
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2012-02-12
Jim Procter
(JAL-1022) ensure all Jmol model filenames are normalised...
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2012-02-12
Jim Procter
(JAL-1022) reverted to original strategy of escaping...
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2012-02-12
Jim Procter
(JAL-1050) ensure all filenames passed in to the load...
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2012-02-12
Jim Procter
(JAL-1025 JAL-1022) File based equivalence used to...
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2012-02-12
Jim Procter
(JAL-1049) only store state reference for sequence...
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2012-02-12
Jim Procter
JAL-1025 JAL-1022 use File based equivalence to map...
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2012-02-12
Jim Procter
JAL-715 - remove platform dependent includes
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2012-01-17
jprocter
Merge branch 'JAL-1040_jar_manifest_fix' into develop
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2012-01-11
jprocter
Merge branch 'JAL-1023_viewall2structsw7' into Release_2_7_B...
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2012-01-11
jprocter
removed empty lines and fields in manifest like:
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2011-12-14
jprocter
JAL-1033, JAL-1013 - ensure pca window shown only after...
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2011-12-14
jprocter
JAL-1013 - rename nucleotide and ensure current calculation...
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2011-12-13
jprocter
JAL-1013 - toy menu to switch between nucleotide and...
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tree
2011-12-08
jprocter
(JAL-1013) specify sequence type to ensure PCA calculation...
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2011-12-08
jprocter
reorder fields to match application
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2011-12-08
jprocter
(JAL-1013) allow sequence type to be specified enabling...
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2011-12-08
jprocter
(JAL-1013) generalise binary sequence encoding scheme...
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2011-12-08
jprocter
(JAL-1013) gap character index for each sequence alphabet
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2011-12-08
jprocter
JAL-1027 fixed up nucleotide subt matrix so it is symmetric...
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2011-12-08
jprocter
(JAL-1023) ensure filename is properly escaped before...
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2011-12-08
jprocter
remove commented lines
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2011-12-08
jprocter
simple escape utility class for JAL-1023 patch
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2011-11-21
jprocter
Merge branch 'JAL-368_dragabovedesktop' into develop
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2011-11-21
jprocter
Merge branch 'JAL-368_dragabovedesktop' into Release_2_7_Branch
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2011-11-21
jprocter
(JAL-368) ensure window never gets a negative Y coordinate...
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2011-11-20
jprocter
Merge branch 'patch_JAL-1004' into develop
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2011-11-20
jprocter
Merge branch 'patch_JAL-1004' into Release_2_7_Branch
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2011-11-20
jprocter
(JAL-1004) add mouse listener to internal panel
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2011-11-15
jprocter
Merge branch 'JAL-976_jabaws2supp' into develop
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2011-11-15
jprocter
todo
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2011-11-14
jprocter
JAL-975 - ensure sequences are padded with gaps before...
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2011-11-09
jprocter
Merge branch 'develop' of https://source.jalview.org...
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws2supp
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into develop
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
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2011-11-09
jprocter
(JAL-986) rendering to imageMap counts as rendering...
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into develop
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
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2011-11-09
jprocter
(JAL-985,JAL-986) documentation and tooltips
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2011-11-09
jprocter
(JAL-985,JAL-986) allow different ID margin calculation...
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2011-11-09
jprocter
(JAL-985,JAL-986) preference widgets for settings
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2011-11-09
jprocter
(JAL-985,JAL-986) preferences documentation
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2011-11-09
jprocter
(JAL-986) getter for integer user preference properties
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2011-11-09
jprocter
(JAL-980) jmol classpath patch
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2011-11-08
jprocter
Merge branch 'JAL-976_jabaws2supp' into develop
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2011-11-08
jprocter
fix NPE when no annotation workers present ...
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2011-11-07
jprocter
(JAL-974) - remove sun-internal class and use message...
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2011-11-07
jprocter
Merge branch 'JAL-976_jabaws2supp' into develop
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2011-11-07
jprocter
(JAL-976,JAL-975) disorder client menu items and check...
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2011-11-07
jprocter
(JAL-974,JAL-975) refactor common code for a JABAWS...
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2011-11-07
jprocter
(JAL-975) formatting
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2011-11-04
jprocter
(JAL-975) ensure AACons is only run on protein sequences...
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2011-11-04
jprocter
Merge branch 'Release_2_7_branch'
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2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into develop
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2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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2011-11-04
jprocter
(JAL-980) patch netbeans and installAnywhere builds
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2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into develop
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2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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2011-11-04
jprocter
(JAL-980) use proper release number for Jmol libs ...
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2011-11-04
jprocter
(JAL-980,JAL-982) - applet console only allows console...
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2011-11-04
jprocter
(JAL-980) update binding for refactored Jmol constants...
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2011-11-04
jprocter
(JAL-980) update Jmol library to 12.2.16452 (built...
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2011-11-03
jprocter
(JAL-976) JABAWSv2 client for InstallAnywhere build
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2011-11-03
jprocter
cleanup imports
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2011-11-03
jprocter
Merge branch 'JAL-976_jabaws2supp' into develop
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2011-11-03
jprocter
update build notes
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2011-11-03
jprocter
(JAL-975) client for amino acid conservation service...
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2011-11-03
jprocter
(JAL-974,JAL-975) new handler for JABAWS sequence and...
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2011-11-03
jprocter
(JAL-976) refactored common code for JABAWS v2 service...
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2011-11-03
jprocter
tidy imports
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2011-11-03
jprocter
(JAL-978) discover JABA1 and JABA2 services and generate...
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