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2023-09-16	MorellThomas	Correctly working implementation of the PaSiMap pipeline	commit \| commitdiff \| tree
2023-09-16	MorellThomas	Almost working	commit \| commitdiff \| tree
2023-09-08	MorellThomas	Properly integrated endGaps option for AlignSeq.traceAlignment()	commit \| commitdiff \| tree
2023-09-07	MorellThomas	Merge branch 'hardcode'	commit \| commitdiff \| tree
2023-09-07	MorellThomas	Merge remote-tracking branch 'origin/releases/Release_2_11_3...	commit \| commitdiff \| tree
2023-09-07	MorellThomas	Implemented least-squares optimisation in ccAnalysis	commit \| commitdiff \| tree
2023-08-04	MorellThomas	Fix alignment and score calculation for cc_analysis	commit \| commitdiff \| tree
2023-07-22	MorellThomas	Implement MSA, scoring and counting the connections	commit \| commitdiff \| tree
2023-07-09	MorellThomas	Copied PCA files to PaSiMap analogues and changed all...	commit \| commitdiff \| tree
2023-07-08	MorellThomas	Includes the PaSiMap button in the CalculationChooser	commit \| commitdiff \| tree
2023-07-02	MorellThomas	Fixed build.gradle, provide diff	commit \| commitdiff \| tree