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JAL-4159 peek in a Jalview project's PCA viewer's title to decide if it is a "pasimap...
2024-05-23
MorellThomas
mend
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2024-05-23
MorellThomas
Fix PaSiMap taking scoreModels input and allow AlignSeq...
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2024-05-23
MorellThomas
Fix PaSiMap not having the eigenvalues saved
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2024-05-22
MorellThomas
revert build.gradle changes
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2024-05-22
MorellThomas
Save PaSiMap with Jalview Session
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2024-05-22
MorellThomas
Rectanuglar selection changed to Mouse Button 3 drag
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2024-04-18
MorellThomas
Merge branch 'test/progressBar' into feature/JAL-4159_pasimap
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2024-04-18
MorellThomas
Implemented ProgressBar for PaSiMap
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2024-04-12
MorellThomas
inlcude progress
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2024-03-15
MorellThomas
Fix output of all dimensions
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2024-03-15
MorellThomas
Alogirthm working, but still giving slightly off results
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2024-03-07
MorellThomas
Inlcude 8 dimensions
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2024-03-06
MorellThomas
Fix PaSiMap on selected sequences
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2024-03-06
MorellThomas
Test version to switch branches
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2024-01-31
MorellThomas
Fix output points column labels
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2024-01-10
MorellThomas
Fixed PaSiMap output columns
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2023-12-05
MorellThomas
Cleanup, note: rectangular selection works by holding...
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2023-12-05
MorellThomas
Adapts PCA points to support rectangular selection
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2023-12-05
MorellThomas
Enable rectangular selection for PaSiMap
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2023-12-04
MorellThomas
New independent jbgui Panel for PaSiMap. Revert the...
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2023-12-04
MorellThomas
New GPCAPanel button : output pairwise alignments ...
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2023-12-01
MorellThomas
Applying adjustablenw_params.patch (JAL-4159)
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2023-11-27
MorellThomas
Commit before pushing to Jalview remote
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2023-10-01
MorellThomas
Fix Reset Button for PaSiMap and issue with indelfreeAstr...
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2023-09-18
MorellThomas
Fix buttons on the PaSiMap plot window
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2023-09-16
MorellThomas
Correctly working implementation of the PaSiMap pipeline
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2023-09-16
MorellThomas
Almost working
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2023-09-08
MorellThomas
Properly integrated endGaps option for AlignSeq.traceAlignment()
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2023-09-07
MorellThomas
Merge branch 'hardcode'
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2023-09-07
MorellThomas
Merge remote-tracking branch 'origin/releases/Release_2_11_3...
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2023-09-07
MorellThomas
Implemented least-squares optimisation in ccAnalysis
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2023-08-04
MorellThomas
Fix alignment and score calculation for cc_analysis
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2023-07-22
MorellThomas
Implement MSA, scoring and counting the connections
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2023-07-09
MorellThomas
Copied PCA files to PaSiMap analogues and changed all...
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2023-07-08
MorellThomas
Includes the PaSiMap button in the CalculationChooser
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2023-07-02
MorellThomas
Fixed build.gradle, provide diff
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