| 2007-02-05 |
amwaterhouse | Alignment editing columns 0 and 1 fixed
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | Fixed bug in trim right annotation adjust
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | stop flickering annotationPanel
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | Fixed bug in trim right annotation adjust
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | image is panel size
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | applet can define groups as parameters
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | Dont add group if seqs not found
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | getWidth -1 for trim right
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | check annotation size when cutting
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | annotation might have been deleted
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | catch control down before editing null pointer
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | 22 = scrollbar and insets widthcvs diff gui/AlignmentPanel...
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | Must allow for scollbar and frame insets when getting...
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | LookandFeel must be set in headless state as window...
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | removed deprecated bits
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | find colours uncommented
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | sequence.getStart() in findTrueIndex
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | get fontmetrics from pg
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Dont add null tooltip
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | New description
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | tooltips
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | set description for groups
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Doesnt move with mouse, friendlier for mac users
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Dont repaint tooltip
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | One class for edit name/description
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | slightly larger window edit name/desc
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | edit annotation name/description
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Can edit annotation name/description
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Consensus, conservation, quality labels may have changed
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | aligned not used
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Dont export annotations if not visible
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Unique name for new group and treegroup
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Adjust features when cutting and pasting
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | make new dataset seq if residues deleted
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | copy feature: check for null values
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | aligned not used
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Check valid residues in ss
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Check seqs in group exist in this alignment
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Any character non aa or nucleotide is a space
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | moved painting routine
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | consensusColouring never used
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Draw helices correctly
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Use util toHexString
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Output groups in annotation file
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Dont clear graphics g before drawing the image
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Image for labels, stops flickering
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | New view copies annotations across
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Tooltips for group names, descriptions
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Description added
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | SequenceGroup parsing added to annotation file
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | ID_ITALICS option in preferences
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | scaleAbove, left and right set when tab selection changes
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Marios annotation bug fixed
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | AnnotationId is hashcode of object
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | Only set the sequence oncecvs diff datamodel/Alignment...
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | Adjusts annotations for sequence edits
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | If its null, set tip empty
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Command takes alignment, not gapChar
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Annotations move when full alignment edited
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Remove unneccessary lines
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | AlignmentAnnotations require id
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Allow for hidden columns
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Only output visible annotations
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | load/get Annotation
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Remove unnecessary line
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Output annotations
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | 1.1 enabled
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Conservation etc have autoCalculated flag set true
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | AdjustAnnotations needs position, number and insert
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | This constructor is never called
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Features output for javascript
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | output now takes alignment, not just sequences
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Extension to fastaFile for myhits
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commit | commitdiff | tree |
| 2007-01-24 |
amwaterhouse | Page setup added
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commit | commitdiff | tree |
| 2007-01-23 |
amwaterhouse | boolean for internal copies
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commit | commitdiff | tree |
| 2007-01-23 |
amwaterhouse | Hidden representatives moved from sequence to viewport
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commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | export features/annotations not for import
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commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | Applet can output and load annotations, features
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commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | Neeed to know protocol for annotation loading
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commit | commitdiff | tree |
| 2007-01-19 |
amwaterhouse | Need to know protocol to load anntotations
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Add the last sequence before annotations
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Take scrollOffset into account
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Tool tip for annotation description
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Set description on copy
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Set tooltip
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | 1.1 enabled
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | put vamsas bit back in
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | File Parsing returns Alignments, not Sequence[]
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Is secondary structure label modified
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Display description
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commit | commitdiff | tree |
| 2007-01-18 |
amwaterhouse | Descriptions can be added to annotations
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commit | commitdiff | tree |
| 2007-01-17 |
amwaterhouse | Edit name/description added to applet
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commit | commitdiff | tree |
| 2007-01-17 |
amwaterhouse | Fit to Window bug fixed
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commit | commitdiff | tree |
| 2007-01-17 |
amwaterhouse | Dont set the font of alignFrameMenubarcvs update appletgui...
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commit | commitdiff | tree |
| 2007-01-04 |
amwaterhouse | Send new sequences when firing alignment changed
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commit | commitdiff | tree |
| 2007-01-04 |
amwaterhouse | Reads in anything following seq id as a description
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commit | commitdiff | tree |
| 2007-01-04 |
amwaterhouse | HEADER and ATOM must be position 0
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commit | commitdiff | tree |
| 2006-12-21 |
amwaterhouse | check on sequence length
|
commit | commitdiff | tree |
| 2006-12-21 |
amwaterhouse | getSequenceAsString
|
commit | commitdiff | tree |
| next |
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