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Merge branch 'develop' into develop_m2_8_1_2
2013-06-09
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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2013-06-09
Jim Procter
JAL-674 avoid runtime dependency on annotate3d webservice...
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2013-06-09
Jim Procter
JAL-674 - update applet build dependency on VARNA
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2013-06-09
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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2013-06-09
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
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2013-06-09
Jim Procter
fix for JAL-1298
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2013-06-09
Jim Procter
JAL-715 - TODO
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2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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2013-06-07
Jim Procter
Merge branch '2_8_1_patch_multiharmony' into develop
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2013-06-07
Jim Procter
JAL-1309 fix broken partition computation for adding...
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2013-06-07
Jim Procter
JAL-945 uniquify prior to submission
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2013-06-07
Jim Procter
formatting
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2013-06-07
Jim Procter
JAL-715 allow headless construction for testing
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2013-06-07
Jim Procter
JAL-724 JAL-715 refactor and create new test for RSBS...
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2013-06-07
Jim Procter
fix for JAL-1246
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2013-06-07
Jim Procter
JAL-1307 patch to squash number format exceptions when...
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2013-06-07
Jim Procter
JAL-1300 documentation
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2013-06-07
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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2013-06-07
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' into...
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2013-05-31
Jim Procter
Merge branch 'develop' into develop_m2_8_1_2
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2013-05-31
Jim Procter
JAL-1259 patch to avoid NPE
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2013-05-31
Jim Procter
Merge branch 'JAL-1259_hotfix' into Release_2_8_Branch
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2013-05-31
Jim Procter
JAL-1259 patch to avoid NPE
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2013-05-24
Jim Procter
Merge branch 'menard' into develop_m2_8_1_2
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2013-05-24
Jim Procter
Merge branch 'JAL-1161_optimisingAnnotationPanel' ...
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2013-05-24
Jim Procter
JAL-???? notes on summarisation and analysis of annotation...
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2013-05-24
Jim Procter
JAL-1291 reinstate fastPaint flag manipulation to make...
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2013-05-24
Jim Procter
JAL-1291 TODO: revised graphGroup model so grouped...
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2013-05-24
Jim Procter
JAL-1291 - don't touch the graphics object until after...
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2013-05-24
Jim Procter
JAL-1291 conditional output of rendering debugging...
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2013-05-24
Jim Procter
patch for JAL-1300 fixes JAL-1294: read and write COMBINE...
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2013-05-24
Jim Procter
JAL-1300 test and example data for parsing annotation...
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2013-05-24
Jim Procter
JAL-1295 test to demonstrate JAL-1294 (caused by JAL...
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2013-05-24
Jim Procter
JAL-1295 refactored Jws2 discovery bootstrap code to...
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2013-05-24
Jim Procter
JAL-1295 relaxed test for Annotation element equivalence...
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2013-05-24
Jim Procter
JAL-381 Desktop.addInternalFrame cannot be called in...
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2013-05-24
Jim Procter
JAL-1299 fix: ensure a new graphGroup is created if...
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2013-05-24
Jim Procter
JAL-1295 JAL-1296 clearer assertion failed message
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2013-05-24
Jim Procter
JAL-1295 JAL-1297 enhance test to check graph visiblity...
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2013-05-24
Jim Procter
fix for JAL-1297: COMBINE output now follows specification...
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2013-05-24
Jim Procter
JAL-1296 JAL-1291 JAL-1297 JAL-1295 JAL-1294
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2013-05-24
Jim Procter
JAL-1291 JAL-1297 JAL-1295 JAL-1294 allow alignment...
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2013-05-24
Jim Procter
javadoc and formatting
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2013-05-24
Jim Procter
JAL-1297 JAL-1295 JAL-1294 sensible toString for benefit...
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2013-05-24
Jim Procter
JAL-1297 JAL-1295 JAL-1294 improve test logic for comparing...
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2013-05-24
Jim Procter
JAL-1296 reinstated tab characters so example annotation...
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2013-05-24
Jim Procter
JAL-1070 - [ not a real patch ] - include offending...
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2013-05-24
Jim Procter
JAL-966 paintrefresher should be abstract [ Merge branch...
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2013-05-24
Jim Procter
JAL-1161 conditional parameters for controlling clipping
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2013-05-24
Jim Procter
JAL-1292 avoid exception by using bitset of arbitrary...
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2013-05-24
Jim Procter
JAL-1161 changed signature to allow clipping bounds...
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2013-05-24
Jim Procter
formatting
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2013-05-24
Jim Procter
JAL-1161 only trigger an annotation repaint in unwrapped...
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2013-05-24
Jim Procter
JAL-1161 enable fastPaint for nudges from scroll bars...
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2013-05-24
Jim Procter
JAL-1161 stick to api
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2013-05-24
Jim Procter
typo
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2013-05-21
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into Release_2_8_Branch
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2013-05-21
Jim Procter
JAL-1140 JAL-674 process with annotate3d and Jmol to...
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2013-05-21
Jim Procter
JAL-674 ensure annotation is properly annotated
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2013-05-21
Jim Procter
JAL-1231 add chain ID
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2013-05-21
Jim Procter
JAL-1231 allow Jmol file handler to read from a stream
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2013-05-21
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
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2013-05-21
Jim Procter
split test for general Stockholm IO consistency (JAL...
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2013-05-21
Jim Procter
JAL-1199 JAL-1272 remove main() method from test class
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2013-05-21
Jim Procter
formatting
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2013-05-21
Jim Procter
JAL-1199 JAL-1272 refactored Natasha's test to a generic...
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2013-05-13
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStream...
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2013-05-13
Jim Procter
Merge branch 'JAL-1289_initCallBack' into Release_2_8_Branch
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2013-05-13
Jim Procter
Merge branch 'JAL-1289_initCallBack' into develop
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2013-05-13
Jim Procter
JAL-1289 call oninit callback even if no alignment...
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2013-04-12
Jim Procter
Merge branch 'JAL-1286_gzip' into Release_2_8_Branch
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2013-04-12
Jim Procter
JAL-1286 URL stream reader tries to use a GZIPInputStream...
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2013-02-15
Jim Procter
JAL-1140 JAL-1215 JAL-1272 test import of RNAML and...
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2013-02-15
Jim Procter
split test for general Stockholm IO consistency (JAL...
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2013-02-15
Jim Procter
JAL-1199 JAL-1272 remove main() method from test class
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2013-02-15
Jim Procter
formatting
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2013-02-15
Jim Procter
JAL-1199 JAL-1272 refactored Natasha's test to a generic...
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2013-02-14
Jim Procter
Merge branch 'JAL-1199-Stk_writing' into rnaml_test
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2013-02-14
Jim Procter
JAL-1140 reinstate the simpler version of parsing code...
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2013-02-14
Jim Procter
patch for bizarre ConcurrentModificationException that...
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2013-02-13
Jim Procter
Merge branch 'jims_annotate3d_update' into menard_finalsep2012
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2012-02-12
Jim Procter
(JAL-1016) noted position where race condition occurs
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2012-02-12
Jim Procter
(JAL-1022) ensure all Jmol model filenames are normalised...
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2012-02-12
Jim Procter
(JAL-1022) reverted to original strategy of escaping...
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2012-02-12
Jim Procter
(JAL-1050) ensure all filenames passed in to the load...
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2012-02-12
Jim Procter
(JAL-1025 JAL-1022) File based equivalence used to...
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2012-02-12
Jim Procter
(JAL-1049) only store state reference for sequence...
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2012-02-12
Jim Procter
JAL-1025 JAL-1022 use File based equivalence to map...
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2012-02-12
Jim Procter
JAL-715 - remove platform dependent includes
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2011-05-05
jprocter
uncommentable debug message for JAL-771
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2011-05-05
jprocter
html tags
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2011-05-05
jprocter
improved javascript callback execution thread and provided...
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2011-05-05
jprocter
separation of jmol script command generation from jmol...
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2011-05-05
jprocter
javadoc and informative error message when external...
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2011-05-05
jprocter
ensure feature renderer settings come from the given...
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2011-05-05
jprocter
added simple stdout debug function
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2011-04-25
jprocter
JAL-824 - additional methods to allow jmol colouring...
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2011-04-25
jprocter
JAL-824 - patch to schema to allow jmol colouring state...
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2011-04-25
jprocter
toggle of inclusion/exclusion of views for colouring...
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2011-04-25
jprocter
JAL-824 - ensure Jmol colouring is a radio button
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