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JAL-2850 improved use of htsjdk api to read contig info
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig...
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2017-11-30 gmungocJAL-1766 additional tests for stub htsjdk wrapper
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2017-11-28 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-28 gmungocJAL-2850 MapList.isToForwardStrand added
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2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig...
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2017-11-24 gmungocJAL-2808 refactoring to better handler filter by Score...
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2017-11-24 gmungocJAL-2808 relocate constants for compiler, add COLUMN_COUNT...
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2017-11-24 gmungocJAL-2808 refine FeatureMatcher interface and matcher...
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2017-11-24 gmungocJAL-2808 don't cache i18n - MessageManager already...
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2017-11-23 gmungocJAL-2808 refactor KeyedMatcher as FeatureMatcher with...
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2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key
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2017-11-23 gmungocJAL-2808 added conditions Present, NotPresent as options
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2017-11-23 gmungocJAL-2808 refactor conversion of table data to beans...
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2017-11-23 gmungocJAL-2808 pass FeatureSettings to controller as array...
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2017-11-22 gmungocJAL-2808 update conditions list on change of attribute...
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2017-11-22 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-22 gmungocJAL-2808 JAL-2069 FeatureTypeSettings (with new Filters...
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2017-11-22 gmungocJAL-2069 renamed helper method better
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2017-11-22 gmungocJAL-2808 defer dispose to allow screen location to...
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2017-11-22 gmungocJAL-2069 Javadoc added only
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2017-11-22 gmungocJAL-1424 enhanced to report dynamic keys separately
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2017-11-22 gmungocJAL-2808 capture feature attributes datatype (Character...
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2017-11-17 gmungocJAL-2808 set (read-only) condition text field as disabled
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2017-11-16 gmungocJAL-2069 fix minor bugs in variable setting
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2017-11-16 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-16 gmungocJAL-2069 removed unused and redundant thresholdIsMinMax
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2017-11-16 gmungocJAL-2816 JAL-2835 additional tests to include colour...
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2017-11-16 gmungocJAL-2835 update test for array-valued attribute name
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2017-11-16 gmungocJAL-2835 update test for CSQ data held as a Map
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2017-11-16 gmungocJAL-2835 test updated for colour by 'nested attribute'
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2017-11-16 gmungocJAL-2816 tests for findFeaturesAtColumn
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2017-11-15 gmungocJAL-2816 exclude filtered / thresholded out features...
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2017-11-15 gmungocJAL-2835 take all CSQ fields; catch invalid field match...
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2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute...
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2017-11-15 gmungocJAL-2835 code tidy (generic type constructors)
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2017-11-15 gmungocJAL-2069 dialog title now 'Variable colour'
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2017-11-15 gmungocJAL- 2835 support filter on nested attribute keys
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2017-11-15 gmungocJAL-2835 add filters for VCF/VEP 'fields of interest'
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2017-11-15 gmungocJAL-1270 add missing "Functional" to tests
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2017-11-14 gmungocJAL-2754 corrected merge conflict
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2017-11-13 gmungocJAL-2738 stubs for filtering VEP and VCF fields of...
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2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-13 gmungocJAL-2662 tweak README, format code
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2017-11-13 gmungocJAL-2176 removed unused Sequence.index
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2017-11-13 gmungocJAL-2679 example accession changed to CAD01290
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2017-11-10 gmungocJAL-2829 fixes and unit tests
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2017-11-10 gmungocJAL-2562 updated findPosition javadoc to match behaviour
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2017-11-10 gmungocJAL-2829 unit tests for failing cases
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2017-11-10 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-08 gmungocJAL-2808 i18n, widget state settings
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2017-11-08 gmungocJAL-2069 ensure threshline instantiated to avoid NPE
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2017-11-08 gmungocJAL-2069 (helper method for) italic titled borders
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2017-11-07 gmungocJAL-2069 choice of no / min / max colour if 'no attribute...
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2017-11-07 gmungocJAL-2069 corrected overloaded constructor behaviour
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2017-11-07 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-11-07 gmungocJAL-2069 add 'by attribute' options to graduated feature...
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2017-11-07 gmungocJAL-2069 add attributeName and noValueColour to FeatureColour
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2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks
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2017-11-07 gmungocJAL-2808 tweak to use Iterable for set of matchers
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2017-11-07 gmungocJAL-2069 JAL-2808 utility method to build combobox...
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2017-11-07 gmungocJAL-2820 limit length of residue tooltip
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2017-11-06 gmungocJAL-2069 cache colours generated from labels
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2017-11-06 gmungocJAL-2820 include attribute value used for feature colour...
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2017-11-06 gmungocJAL-2808 small tweak to getString to quote the pattern...
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2017-11-03 gmungocJAL-2808 attribute description as tooltip in dropdown...
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2017-11-03 gmungocJAL-2808 JAL-2069 record feature attributes descriptions...
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2017-11-02 gmungocJAL-2808 only initialise AND and OR buttons once
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2017-11-02 gmungocJAL-2808 new Filters tab in Feature Settings
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2017-11-02 gmungocJAL-2808 refactored getColor() checks feature visibility
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2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getColor...
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2017-11-02 gmungocJAL-2808 convenience method to get attribute as String
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2017-11-02 gmungocJAL-2808 attribute filtering removed, extract method...
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2017-11-02 gmungocJAL-2808 reverted to develop (attribute filters removed)
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2017-11-02 gmungocJAL-2808 toString modified, tests corrected
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2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into
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2017-10-31 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-10-31 gmungocJAL-2791 select columns by _visible_ features
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2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditions...
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2017-10-31 gmungocJAL-2792 test updated for 3 column table
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2017-10-31 gmungocJAL-2808 reduce code with WindowAdapter
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2017-10-30 gmungocJAL-2791 check feature visibility when selecting columns
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2017-10-30 gmungocJAL-2808 add attribute filter options to graduate colour...
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2017-10-30 gmungocJAL-2792 Javadoc updates
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2017-10-30 gmungocJAL-2808 add attribute filter(s) to FeatureColour
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2017-10-30 gmungocJAL-2808 remember attribute keys by feature type
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2017-10-30 gmungocJAL-2808 classes to support filtering by attribute...
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2017-10-27 gmungocJAL-2526 updated javadoc
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2017-10-27 gmungocJAL-2754 renamed proguard.jar to include version number
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2017-10-27 gmungocJAL-2754 updated proguard.jar to 5.3.3
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2017-10-27 gmungocJAL-2792 include source in copy constructor; null pointer...
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2017-10-27 gmungocJAL-2754 update to specify Java 1.8(+)
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2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature...
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2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF
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2017-10-26 gmungocJAL-2792 html table for Feature Details report
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2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome...
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2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching...
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2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging
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2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl...
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2017-10-24 gmungocJAL-1739 Javadoc updated for Lambda expression parser...
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