git://source.jalview.org
/
jalview.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
JAL-4134 compute normalised dot product for contact matrix similarities
2021-09-08
Jim Procter
JAL-3829 JAL-3868 TODO
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 formatting
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 integration test verifying mock response is...
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 look up column in FTS data
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 mocking for PDBFTS for related query to UniprotFTS...
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 pull out structure chooser query source tests...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 JAL-3865 test structure chooser queries to...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 use sequence dependent constructor for structure...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 mocking for testing 3D-Beacons FTS endpoint
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3863 promote non-canonical version of dbref to...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 comments on the 3D structure chooser’s initialisati...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3865 isolate PDB and TDB clients and last query...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 JAL-3865 StructureChooserQuerySource implementation...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3855 don’t need to query Alphafold2 repository...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the StructureCh...
commit
|
commitdiff
|
tree
2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
commit
|
commitdiff
|
tree
2021-09-02
Jim Procter
Merge branch 'cherry-pick/r2_11_2_JAL-3509' into develop
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3863 fix test and note about fragility
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3863 add canonical DBRefEntry flag to Jalview project
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 generalised Alphafold retrieval mechanism...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 Structure chooser specific FTS interface and...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 updated tests for 3db fetcher’s working FTS...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 proof in principle 3d-beacons sequence fetcher...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 3d-beacons has a custom alignment retrieval...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 fixed up the 3d-beacons data columns definitions...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 tidying up PDBFTSRestClient test responses...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 Javadoc for FTSColumnPreferences
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 pushed the PDBFTSClient specific code to new...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 removed unneeded attribute in FTS core
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 forgot to add in the dummy 3d-beacons db proxy
commit
|
commitdiff
|
tree
2021-08-20
Jim Procter
JAL-3855 JAL-2349 (d0h) class for holding and accessing...
commit
|
commitdiff
|
tree
2021-08-18
Jim Procter
JAL-3855 EBI Alphafold database fetcher
commit
|
commitdiff
|
tree
2021-08-18
Jim Procter
JAL-3855 JAL-2349 download PAE matrix along with alpha...
commit
|
commitdiff
|
tree
2021-08-18
Jim Procter
JAL-2349 - deobfuscate the renderer and fix it .. work...
commit
|
commitdiff
|
tree
2021-08-18
Jim Procter
JAL-2349 allow contact map to be associated with a...
commit
|
commitdiff
|
tree
2021-08-13
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
commit
|
commitdiff
|
tree
2021-08-13
Jim Procter
JAL-2349 patch NPE exception during gradle test..
commit
|
commitdiff
|
tree
2021-08-11
Jim Procter
JAL-2349 remove test code
commit
|
commitdiff
|
tree
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into features...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 suppress NPE when trying to retrieve SIFTS...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 ALPHAFOLD database source based on the PDB...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 check if an alpha fold ID and retrieve using...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 check for existence of an alpha fold model...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 convenience method to check a URL will return...
commit
|
commitdiff
|
tree
2021-07-13
Jim Procter
JAL-3842 fix automatic what's new link for custom version...
commit
|
commitdiff
|
tree
2021-06-30
Jim Procter
JAL-3842 JAL-3746 (need to cherry pick to develop)...
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3840 don’t update the modal residue count for gaps
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
fixes JAL-3840
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3842 2.11.1.5 what’s new, release notes, and version...
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
Merge branch 'patch/JAL-3840_2_11_1_4' into releases...
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3840 don’t update the modal residue count for gaps
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
fixes JAL-3840
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
commit
|
commitdiff
|
tree
2021-04-06
Jim Procter
JAL-3832 dummy 3d-beacons database client and code...
commit
|
commitdiff
|
tree
2021-03-15
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch'
commit
|
commitdiff
|
tree
2021-03-09
Jim Procter
JAL-3816 release date updated to 9th March
commit
|
commitdiff
|
tree
2021-03-05
Jim Procter
JAL-3816 release date set for 8th March and updated...
commit
|
commitdiff
|
tree
2021-03-05
Jim Procter
JAL-3816 new known defects JAL-3705 and JAL-3806
commit
|
commitdiff
|
tree
2021-03-04
Jim Procter
Revert "Merge branch 'bug/JAL-3806_mappingCoversSequence...
commit
|
commitdiff
|
tree
2021-03-04
Jim Procter
Revert "JAL-3816 release notes for JAL-3806"
commit
|
commitdiff
|
tree
2021-02-26
Jim Procter
JAL-3816 release notes for JAL-3806
commit
|
commitdiff
|
tree
2021-02-26
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence' into...
commit
|
commitdiff
|
tree
2021-02-26
Jim Procter
JAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818...
commit
|
commitdiff
|
tree
2021-02-24
Jim Procter
Merge branch 'bug/JAL-3818_jmolDeadlock' into releases...
commit
|
commitdiff
|
tree
2021-02-24
Jim Procter
Merge branch 'releases/Release_2_11_1_4_debianpatches...
commit
|
commitdiff
|
tree
2021-02-17
Jim Procter
JAL-3821 patch for 2.11.2 to retrieve RNA ENA records...
commit
|
commitdiff
|
tree
2021-02-17
Jim Procter
Merge branch 'feature/JAL-3692enaEndpoint' into patch...
commit
|
commitdiff
|
tree
2021-02-07
Jim Procter
JAL-3816 bump version number and cut release notes
commit
|
commitdiff
|
tree
2021-02-07
Jim Procter
JAL-3815 default /etc/jalview_properties under utils...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
Merge branch 'task/JAL-3521_Slimmed_down_build.gradle_for_de...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
Merge branch 'releases/Release_2_11_1_4_debianpatches...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3814 don’t automatically launch the news browser...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3813 NOIDENTIFIERSSERVICE preference disables jalview...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3812 new argument ‘-nohtmltemplates’ and user preference...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3811 document SHOW_JWS2_SERVICES user preference...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3814 NONEWS property
commit
|
commitdiff
|
tree
2020-11-13
Jim Procter
JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch'
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3766 what’s new and release notes for 2.11.1.3
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3759 fix compilation error for test
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3766 release notes for JAL-3759
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3759 exclude hidden columns when processing...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
Merge branch 'documentation/JAL-3766_relnotes' into...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3766 release notes for JAL-3765 JAL-3763 JAL-3760...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
Merge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
JAL-3725 fix tests for EMBLFlatFile parser when mapping...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
JAL-3725 patch EMBL flat file to exclude stop codon...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
JAL-3760 fix tests for changed behaviour
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
JAL-3760 refactor nucleotide proportion test to per...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
Merge branch 'bug/JAL-3760_protsTreatedAsNucleotides...
commit
|
commitdiff
|
tree
next