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2024-05-23	MorellThomas	mend	commit \| commitdiff \| tree
2024-05-23	MorellThomas	Fix PaSiMap taking scoreModels input and allow AlignSeq...	commit \| commitdiff \| tree
2024-05-23	MorellThomas	Fix PaSiMap not having the eigenvalues saved	commit \| commitdiff \| tree
2024-05-22	MorellThomas	revert build.gradle changes	commit \| commitdiff \| tree
2024-05-22	MorellThomas	Save PaSiMap with Jalview Session	commit \| commitdiff \| tree
2024-05-22	MorellThomas	Rectanuglar selection changed to Mouse Button 3 drag	commit \| commitdiff \| tree
2024-04-18	MorellThomas	Merge branch 'test/progressBar' into feature/JAL-4159_pasimap	commit \| commitdiff \| tree
2024-04-18	MorellThomas	Implemented ProgressBar for PaSiMap	commit \| commitdiff \| tree
2024-04-12	MorellThomas	inlcude progress	commit \| commitdiff \| tree
2024-03-15	MorellThomas	Fix output of all dimensions	commit \| commitdiff \| tree
2024-03-15	MorellThomas	Alogirthm working, but still giving slightly off results	commit \| commitdiff \| tree
2024-03-07	MorellThomas	Inlcude 8 dimensions	commit \| commitdiff \| tree
2024-03-06	MorellThomas	Fix PaSiMap on selected sequences	commit \| commitdiff \| tree
2024-03-06	MorellThomas	Test version to switch branches	commit \| commitdiff \| tree
2024-01-31	MorellThomas	Fix output points column labels	commit \| commitdiff \| tree
2024-01-10	MorellThomas	Fixed PaSiMap output columns	commit \| commitdiff \| tree
2023-12-05	MorellThomas	Cleanup, note: rectangular selection works by holding...	commit \| commitdiff \| tree
2023-12-05	MorellThomas	Adapts PCA points to support rectangular selection	commit \| commitdiff \| tree
2023-12-05	MorellThomas	Enable rectangular selection for PaSiMap	commit \| commitdiff \| tree
2023-12-04	MorellThomas	New independent jbgui Panel for PaSiMap. Revert the...	commit \| commitdiff \| tree
2023-12-04	MorellThomas	New GPCAPanel button : output pairwise alignments ...	commit \| commitdiff \| tree
2023-12-01	MorellThomas	Applying adjustablenw_params.patch (JAL-4159)	commit \| commitdiff \| tree
2023-11-27	MorellThomas	Commit before pushing to Jalview remote	commit \| commitdiff \| tree
2023-10-01	MorellThomas	Fix Reset Button for PaSiMap and issue with indelfreeAstr...	commit \| commitdiff \| tree
2023-09-18	MorellThomas	Fix buttons on the PaSiMap plot window	commit \| commitdiff \| tree
2023-09-16	MorellThomas	Correctly working implementation of the PaSiMap pipeline	commit \| commitdiff \| tree
2023-09-16	MorellThomas	Almost working	commit \| commitdiff \| tree
2023-09-08	MorellThomas	Properly integrated endGaps option for AlignSeq.traceAlignment()	commit \| commitdiff \| tree
2023-09-07	MorellThomas	Merge branch 'hardcode'	commit \| commitdiff \| tree
2023-09-07	MorellThomas	Merge remote-tracking branch 'origin/releases/Release_2_11_3...	commit \| commitdiff \| tree
2023-09-07	MorellThomas	Implemented least-squares optimisation in ccAnalysis	commit \| commitdiff \| tree
2023-08-04	MorellThomas	Fix alignment and score calculation for cc_analysis	commit \| commitdiff \| tree
2023-07-22	MorellThomas	Implement MSA, scoring and counting the connections	commit \| commitdiff \| tree
2023-07-09	MorellThomas	Copied PCA files to PaSiMap analogues and changed all...	commit \| commitdiff \| tree
2023-07-08	MorellThomas	Includes the PaSiMap button in the CalculationChooser	commit \| commitdiff \| tree
2023-07-02	MorellThomas	Fixed build.gradle, provide diff	commit \| commitdiff \| tree

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