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off by one for sequence associated annotation
2012-09-04 jprocteroff by one for sequence associated annotation
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2012-09-04 jprocterunused variable
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2012-09-04 jprocterJAL-974 JRonn thresholds
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2012-09-03 jprocterJAL-591 adapt option layout to width of dialog box
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2012-09-03 jprocterJAL-975 JAL-974 JAL-976 always adjust height after...
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2012-09-03 jprocterJAL-974 show thresholds for disorder predictor annotation...
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2012-09-03 jprocterJAL-1153 ensure _linecolour is copied in copy constructor
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2012-09-03 jprocterJAL-1111 news reader shouldn't be modal.
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2012-09-03 jprocterJAL-1111 doh - helps if you pass modality flag onto...
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2012-09-02 jprocterJAL-812 only trigger alignment redraw and calculation...
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2012-09-02 jprocterJAL-1007 refactored code and patched calculation bug
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2012-09-02 jprocterJAL-1015 documentation for basic HTML sequence annotation...
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2012-09-02 jprocterJAL-1075 JAL-1062 documentation and new figure for...
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2012-09-02 jprocterJAL-1158 - request focus after opening window.
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2012-09-02 jprocterJAL-659 cope with case insensitive accessions by forcing...
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2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved...
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2012-09-02 jprocterJAL-1062 use matching region or first section of sequence...
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2012-09-01 jprocterJAL-1075 sort nodes alphabetically
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2012-09-01 jprocterJAL-1160 support horizontal mouse wheel scrolling events
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2012-09-01 jprocterJAL-1161 JAL-1160 implement custom mousewheel listener...
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2012-09-01 jprocterjavadoc
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2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible...
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2012-08-31 jprocterJAL-1015 new menu items in desktop popup menu for creating...
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2012-08-31 jprocterJAL-1015 resolve dataset sequence before searching...
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2012-08-31 jprocterJAL-1157 new window for displaying HTML formatted text...
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2012-08-31 jprocterJAL-1015 refactor tooltip html generation code to jalview...
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2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence...
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2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names...
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2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graphs...
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2012-08-29 jprocterJAL-1066 limit available rows to per-sequence when...
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2012-08-29 jprocterJAL-974 skip empty rows
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2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows...
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2012-08-29 jprocterformatting
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2012-08-29 jprocterJAL-1153 JAL-1155 improved layout and allowed labels...
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2012-08-29 jprocterJAL-1153 new runtime property set to first non-null...
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2012-08-29 jprocterJAL-48 patch NPE when encountering an alignment window...
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2012-08-28 jprocterremove contaminant imports
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2012-08-28 jprocterremove contaminant imports
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2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documentation...
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2012-08-28 jprocterformatting
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2012-08-28 jprocterJAL-1066 basic gui and functionality for per-sequence...
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2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associated...
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2012-08-28 jprocterformatting
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2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with...
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2012-08-28 jprocterJAL-974 create mixture of sequence features marking...
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2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from...
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2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server errors...
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2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated...
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2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service...
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2012-08-28 jprocterjavadoc and note about broken semantics for findIndex
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2012-08-28 jprocterJAL-1149 patch
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2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation...
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2012-08-24 jprocterJAL-1087 skip processing any of the other command line...
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2012-08-24 jprocterJAL-1143 - ensure we revalidate annotation panel height...
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2012-08-23 jprocterJAL-975 JAL-951 test class for viewing layout for JABAWS...
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2012-08-07 jprocterJAL-1137 clean up old-style menu code and look
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2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service...
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2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
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2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client...
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2012-08-05 jprocterJAL-1131 - todos for later versions
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2012-08-05 jprocterJAL-1131 ensure new dataset sequence is created if...
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2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotation...
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2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignment...
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2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params
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2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content...
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2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across...
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2012-08-03 jprocterJAL-1136 less code-dependent formula for creating server...
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2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container...
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2012-08-03 jprocterJAL-1115 reference to List<SequenceI> passed in 'alignment...
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2012-08-02 jprocterJAL-976 better logging/error reporting for disorder...
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2012-08-02 jprocterJAL-976 JAL-958 todo list for release
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2012-08-01 jprocterJAL-976 ensure protein disorder services appears in...
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2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws services...
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2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f941162e8b...
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2012-07-08 jprocterdocumentation for PCA calculation parameters and reset...
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2012-07-08 jproctera209409239 (JAL-976 - add support for storing service...
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2012-07-08 jprocterJAL-976 clean out associated annotation
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2012-07-08 jprocterJAL-976 implement additional calcId method
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2012-07-08 jprocterJAL-976 simpler parameter update model
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2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for parameter...
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2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associated...
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2012-07-08 jprocterJAL-976 pick an available instance of a service based...
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2012-07-08 jprocterbugfix - use currently held parameters
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2012-07-08 jprocterJAL-976 - storing service parameters on the view model
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2012-07-06 jprocterJAL-976 test if the sliders have been modified from...
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2012-07-06 jprocterunique URI for service type
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2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calculation...
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2012-07-06 jproctertidy imports
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2012-07-06 jprocterJAL-976 - add support for storing service parameter...
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2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
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2012-07-03 jprocterJAL-974 - broken copy of feature settings
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2012-07-02 jprocterJAL-1129 progress bar - this patch doesn't provide...
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2012-07-02 jprocterJAL-968 incremental - PNG/EPS output has annotation...
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2012-07-02 jproctertidy imports
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2012-07-02 jprocterJAL-974 create graduated feature colours for annotation...
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2012-07-02 jprocterJAL-974 - use refactored methods on AlignmentPanel
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2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to AlignmentP...
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2012-07-01 jprocterJAL-1117 alleviate lock starvation
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2012-07-01 jprocterensure all annotation dependent rendering gets refreshed
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2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes...
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