| 2005-05-03 |
amwaterhouse | 1.1 compatible, formatting changes
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commit | commitdiff | tree |
| 2005-05-03 |
amwaterhouse | FormatAdapter readFile
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commit | commitdiff | tree |
| 2005-05-03 |
amwaterhouse | 1.1 compatible
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commit | commitdiff | tree |
| 2005-05-03 |
amwaterhouse | findKmers and fetchSequenceFeatures removed
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commit | commitdiff | tree |
| 2005-05-03 |
amwaterhouse | Removed as obfuscation of classes wiill change class...
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commit | commitdiff | tree |
| 2005-04-29 |
amwaterhouse | selects default colour
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commit | commitdiff | tree |
| 2005-04-29 |
amwaterhouse | just tidying up unused imports
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commit | commitdiff | tree |
| 2005-04-29 |
amwaterhouse | REad in defaultColour
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commit | commitdiff | tree |
| 2005-04-29 |
amwaterhouse | preferences held statically
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commit | commitdiff | tree |
| 2005-04-29 |
amwaterhouse | preferences moved to desktop
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commit | commitdiff | tree |
| 2005-04-29 |
amwaterhouse | read in preferences at start up
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | no longer used
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Label changes as AF recommended
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | must set consensus in child colourscheme
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Updated for use by preferences panel
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | GUI changes
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Preferences panel added
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Viewport now looks at preferences when loading up
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Set fullscreen if in preferences
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | can search ids
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | set as default added
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | search ids added
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Menu names changed
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | JInternalFrame is within class. Method to load default...
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | Preferences panel added
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commit | commitdiff | tree |
| 2005-04-28 |
amwaterhouse | set gap char modified
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commit | commitdiff | tree |
| 2005-04-25 |
amwaterhouse | if applet, load properties in void init
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commit | commitdiff | tree |
| 2005-04-25 |
amwaterhouse | +1 in fastpaint sends coloured text outofbounds
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commit | commitdiff | tree |
| 2005-04-25 |
amwaterhouse | dont update overview every repaint
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commit | commitdiff | tree |
| 2005-04-25 |
amwaterhouse | Loading alignment threaded
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commit | commitdiff | tree |
| 2005-04-25 |
amwaterhouse | Syncronize drawPanel, as overviewpanel is threaded
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commit | commitdiff | tree |
| 2005-04-25 |
amwaterhouse | Overviewpanel allows for large alignments
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commit | commitdiff | tree |
| 2005-04-21 |
amwaterhouse | add consslider to palette layer
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commit | commitdiff | tree |
| 2005-04-21 |
amwaterhouse | Allow for clipped region when printing
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commit | commitdiff | tree |
| 2005-04-21 |
amwaterhouse | Tick 5 and 10 marks
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commit | commitdiff | tree |
| 2005-04-21 |
amwaterhouse | Printing changes
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commit | commitdiff | tree |
| 2005-04-21 |
amwaterhouse | update conSlider when colour changes
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commit | commitdiff | tree |
| 2005-04-21 |
amwaterhouse | Allow for -open arg
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commit | commitdiff | tree |
| 2005-04-19 |
amwaterhouse | no need to keep setting selected, its on the palette...
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commit | commitdiff | tree |
| 2005-04-19 |
amwaterhouse | add splash to palette layer
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commit | commitdiff | tree |
| 2005-04-19 |
amwaterhouse | Printing of trees corrected. Antialiasing on
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | painting syncronized, spin increments in units, not...
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | wrap alignment box paints correctly
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | blosum62 must have its on consensus
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | setendres -1
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | position of bioinformatics
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | set PNG antialiasing on
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | show sliders when first selecting conservation,PID
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | dont drag beyond end of alignment
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | selected group draws last residue
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | repaint removed
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | fastPaint modified incase scroll is more than page...
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | calls fontChanged
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commit | commitdiff | tree |
| 2005-04-18 |
amwaterhouse | fontChanged method added, componentListener removed
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commit | commitdiff | tree |
| 2005-04-16 |
amwaterhouse | make sure we draw last line of wrapped alignment
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commit | commitdiff | tree |
| 2005-04-16 |
amwaterhouse | allow for final line of alignment
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commit | commitdiff | tree |
| 2005-04-16 |
amwaterhouse | fix wrap alignment vscroll visible amount
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commit | commitdiff | tree |
| 2005-04-16 |
amwaterhouse | check if colourscheme is null
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commit | commitdiff | tree |
| 2005-04-16 |
amwaterhouse | AlignPanel RefreshPanels put into paintComponent
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | clustalx exception in colourchange
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | no longer used
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | consensus held in residueColour
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | no need to send consensus
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | takes on methods previously in desktop
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | no need to send consensus everytime
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | pid and conservation changes
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | adjust annotation panel height when font changed
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | pid and conservation slider moved to sliderPanel
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | fontmetrics must be obtained after font change
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | draw graph label lower down
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | public vconsensus available for PID and Blosum
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | PID and conservation colouring changes
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commit | commitdiff | tree |
| 2005-04-15 |
amwaterhouse | conservation & consensus recalc if group changed
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | comment out jnetpropb, h and c
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | not added to the palette layer
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | use 3 as the threshold
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | if image is null, repaint
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | blosum colour now displayed ok
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | use webservice info
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | update status bar with mouse over
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | use webservice info to display web service state
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commit | commitdiff | tree |
| 2005-04-14 |
amwaterhouse | new class
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | sortByTreeMenu added
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | use AlignFrame.NEW_WINDOW_WIDTH
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | getTree method added
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | if not active tree, colour threshold grey
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | use NEW_WINDOW_WIDTH
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | invalidate alignPanel before changing size
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | new constructor for addtodesktop, sliders set to top...
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | draws last residue
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | repainting issues fixed
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commit | commitdiff | tree |
| 2005-04-13 |
amwaterhouse | treeMenuItem added, conservation sliders, finder top...
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | try out spinning logo
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | return from painting if size is 0
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | Printing wrapped alignment corrected
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | Display of wrapped search results corrected
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | endREs -1
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | conservation changed to quality
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | clear the last area in fast paint
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commit | commitdiff | tree |
| 2005-04-08 |
amwaterhouse | scale above, left right added
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commit | commitdiff | tree |
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