git://source.jalview.org
/
jalview.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
inlcude progress
2023-07-23
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
|
tree
2023-07-23
James Procter
JAL-4090 JAL-4243 bio.tools json file release notes
commit
|
commitdiff
|
tree
2023-07-22
James Procter
JAL-4243 Jalview 2.11.2.7’s biotool record as JSON...
commit
|
commitdiff
|
tree
2023-07-20
James Procter
JAL-3855 tree title for PAE matrix tree is PAE Matrix...
commit
|
commitdiff
|
tree
2023-07-20
James Procter
JAL-3855 auto select clusters and fix up colouring...
commit
|
commitdiff
|
tree
2023-07-19
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
|
tree
2023-07-19
James Procter
Merge branch 'patch/JAL-3855_fixup_pae' into develop
commit
|
commitdiff
|
tree
2023-07-18
James Procter
Merge branch 'develop' into patch/JAL-3855_fixup_pae
commit
|
commitdiff
|
tree
2023-07-18
James Procter
JAL-4153 comments re patch incorrectly committed under...
commit
|
commitdiff
|
tree
2023-07-18
James Procter
JAL-3855 PAE matrices are transposed on import from...
commit
|
commitdiff
|
tree
2023-07-18
James Procter
JAL-3855 JAL-4124 test checks asymmetric matrices are...
commit
|
commitdiff
|
tree
2023-07-18
James Procter
JAL-3858 fix off-by-one in matrix visualisation and...
commit
|
commitdiff
|
tree
2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
commit
|
commitdiff
|
tree
2023-07-18
James Procter
JAL-3858 annotation .height is bigger than graphHeight...
commit
|
commitdiff
|
tree
2023-07-18
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
|
tree
2023-07-17
James Procter
JAL-4119 TRACE level console message reporting download...
commit
|
commitdiff
|
tree
2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
commit
|
commitdiff
|
tree
2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
commit
|
commitdiff
|
tree
2023-07-17
James Procter
JAL-4223 add testdata for test
commit
|
commitdiff
|
tree
2023-07-17
James Procter
JAL-4090 mark JAL-4178 and JAL-4142 as known issues
commit
|
commitdiff
|
tree
2023-07-17
James Procter
JAL-4217 move Commands.structureImageTest to testTask1
commit
|
commitdiff
|
tree
2023-07-12
James Procter
JAL-4223 - test and patch to ensure numbering matches...
commit
|
commitdiff
|
tree
2023-07-11
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
|
tree
2023-07-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
commit
|
commitdiff
|
tree
2023-07-07
James Procter
JAL-4217 JAL-629 built in 25s time out waiting for...
commit
|
commitdiff
|
tree
2023-07-07
James Procter
JAL-4090 update 2.11.3.0 release notes (with in-progress...
commit
|
commitdiff
|
tree
2023-07-07
James Procter
Merge branch 'patch/JAL-4119_sifts_ftp_split' into...
commit
|
commitdiff
|
tree
2023-07-07
James Procter
Merge branch 'develop' into patch/JAL-4195_cli_eps_export_npe
commit
|
commitdiff
|
tree
2023-07-07
James Procter
JAL-4195 add exception handling for all other CommandsTest...
commit
|
commitdiff
|
tree
2023-07-07
James Procter
JAL-4221 update description when transferring annotation...
commit
|
commitdiff
|
tree
2023-07-07
James Procter
JAL-629 even more console debug for --structureviewer...
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-629 liberal defensive coding, comments about refactoring...
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-629 make —structure image work again after threading...
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-4217 catch case when the structure viewer doesn...
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-4217 interruptedExceptions should also break any...
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-2292 verify mixed case alignment actually aligns
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExport...
commit
|
commitdiff
|
tree
2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExport...
commit
|
commitdiff
|
tree
2023-07-05
James Procter
Merge branch 'patch/JAL-2292_caseSensitivePAE' into...
commit
|
commitdiff
|
tree
2023-07-05
James Procter
Merge branch 'patch/JAL-4213_addref_with_selection...
commit
|
commitdiff
|
tree
2023-07-04
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
|
tree
2023-07-04
James Procter
Merge branch 'merge/from_2_11_2_7_to_2_11_3_0' into...
commit
|
commitdiff
|
tree
2023-07-04
James Procter
JAL-4117 JAL-1551 source licensing
commit
|
commitdiff
|
tree
2023-07-04
James Procter
JAL-4117 Fri June 30th release of 2.11.2.7 with Jalview...
commit
|
commitdiff
|
tree
2023-06-30
James Procter
JAL-4217 try really hard to shut down and dispose of...
commit
|
commitdiff
|
tree
2023-06-30
James Procter
JAL-4216 release notes
commit
|
commitdiff
|
tree
2023-06-30
James Procter
JAL-4216 compute size of annotation using start/end...
commit
|
commitdiff
|
tree
2023-06-30
James Procter
Merge branch 'task/JAL-4001_Plausible_API' into develop
commit
|
commitdiff
|
tree
2023-06-29
James Procter
Merge branch 'task/JAL-4001_Plausible_API' into develop
commit
|
commitdiff
|
tree
2023-06-29
James Procter
JAL-4117 JAL-4001 plausible analytics release notes...
commit
|
commitdiff
|
tree
2023-06-29
James Procter
JAL-4090 update from 2.11.2.7 JAL-4117 - version bump...
commit
|
commitdiff
|
tree
2023-06-29
James Procter
JAL-4001 analytics url provided by https://www.jalview...
commit
|
commitdiff
|
tree
2023-06-22
James Procter
JAL-4213 don’t pass active selection when actioning...
commit
|
commitdiff
|
tree
2023-06-22
James Procter
JAL-4213 - document the addReferenceAnnotations method...
commit
|
commitdiff
|
tree
2023-06-22
James Procter
JAL-2292 - ensure mapping is built for equal symbols...
commit
|
commitdiff
|
tree
2023-06-21
James Procter
Merge branch 'patch/JAL-4196_structure_viewer_synchronising...
commit
|
commitdiff
|
tree
2023-06-08
James Procter
Merge branch 'develop' into patch/JAL-4196_structure_viewer_...
commit
|
commitdiff
|
tree
2023-06-08
James Procter
JAL-4196 make very sure we avoid CME by defensively...
commit
|
commitdiff
|
tree
2023-06-08
James Procter
JAL-4196 report an error if structure view doesn’t...
commit
|
commitdiff
|
tree
2023-06-08
James Procter
JAL-4196 structure view cli tests wait using new jalview...
commit
|
commitdiff
|
tree
2023-06-08
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
commit
|
commitdiff
|
tree
2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
commit
|
commitdiff
|
tree
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
commit
|
commitdiff
|
tree
2023-06-07
James Procter
JAL-4195 catch thrown exceptions (if any) during image...
commit
|
commitdiff
|
tree
2023-06-07
James Procter
JAL-4195 tidy up desktop instances after creating them
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-4195 report full stack trace for exceptions raised...
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-4160 --colour can now take user defined scheme...
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-4160 JAL-4195 wait around until alignFrame calculators...
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-1551 formatting and javadoc for ArgParser rather...
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-629 - remove TODO from jalview.bin.Jalview since...
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-4195 Debug message indicating creation of an image...
commit
|
commitdiff
|
tree
2023-06-06
James Procter
JAL-1551 a bit of javadoc for Jalview.testoutput methods
commit
|
commitdiff
|
tree
2023-06-02
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
commit
|
commitdiff
|
tree
2023-06-02
James Procter
JAL-4090 update 2.11.3.0 release notes for recent merges
commit
|
commitdiff
|
tree
2023-06-01
James Procter
Merge branch 'features/JAL-4134_use_annotation_row_for_colou...
commit
|
commitdiff
|
tree
2023-06-01
James Procter
Merge branch 'develop' into features/JAL-4134_use_annotation...
commit
|
commitdiff
|
tree
2023-06-01
James Procter
JAL-4134 properly resolve positions in associated aligned...
commit
|
commitdiff
|
tree
2023-05-30
James Procter
JAL-4134 repaint the tree or alignment view(s) when...
commit
|
commitdiff
|
tree
2023-05-30
James Procter
JAL-4134 highlight selected column nodes on the linked...
commit
|
commitdiff
|
tree
2023-05-29
James Procter
JAL-4190 - escape clears selected nodes
commit
|
commitdiff
|
tree
2023-05-29
James Procter
JAL-4134 JAL-2349 test & fixed implementation(ish)...
commit
|
commitdiff
|
tree
2023-05-29
James Procter
Merge branch 'develop' into features/JAL-4134_use_annotation...
commit
|
commitdiff
|
tree
2023-05-26
James Procter
JAL-4134 internationalise popup menu entries and show...
commit
|
commitdiff
|
tree
2023-05-26
James Procter
JAL-1556 fix bad import
commit
|
commitdiff
|
tree
2023-05-26
James Procter
Merge branch 'develop' into features/JAL-4134_use_annotation...
commit
|
commitdiff
|
tree
2023-05-26
James Procter
JAL-1556 initial implementation - no tests as yet but...
commit
|
commitdiff
|
tree
2023-05-25
James Procter
JAL-4134 popup menu and annotation row property to...
commit
|
commitdiff
|
tree
2023-05-25
James Procter
JAL-2381 don’t need to set description, dbrefs etc...
commit
|
commitdiff
|
tree
2023-05-25
James Procter
JAL-2381 copy and paste sequence also copies contact...
commit
|
commitdiff
|
tree
2023-05-25
James Procter
Merge branch 'bug/JAL-4186_space_in_sequence_name_causes_emp...
commit
|
commitdiff
|
tree
2023-05-22
James Procter
JAL-4134 map between column and node selections better...
commit
|
commitdiff
|
tree
2023-05-22
James Procter
JAL-4134 efficiency improvement
commit
|
commitdiff
|
tree
2023-05-22
James Procter
JAL-629 javadoc on StructureSelectionManager.computeMapping
commit
|
commitdiff
|
tree
2023-05-22
James Procter
JAL-4134 only build tree when showing it in the tree...
commit
|
commitdiff
|
tree
2023-05-22
James Procter
JAL-4134 catch NPE - though in principle this should...
commit
|
commitdiff
|
tree
2023-05-22
James Procter
Merge branch 'JAL-1551_2_11_3_spotlett' into features...
commit
|
commitdiff
|
tree
2023-05-22
James Procter
Merge branch 'spotless_2' into JAL-1551_2_11_3_spotlett
commit
|
commitdiff
|
tree
2023-05-22
James Procter
JAL-1551 spotless
commit
|
commitdiff
|
tree
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annotation...
commit
|
commitdiff
|
tree
2023-05-19
James Procter
JAL-1551 spotlessApply
commit
|
commitdiff
|
tree
next