| 2006-11-06 |
amwaterhouse | If start is not zero, we need to put -- at the start
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | example links
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | Remember fileName in alignFrame
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | dont limit menu size
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commit | commitdiff | tree |
| 2006-11-06 |
amwaterhouse | accelerators, save menu item
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Alignpanel is not new if copied from j2xml
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Consensus may already have been removed
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Remove unnecessary refresh
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commit | commitdiff | tree |
| 2006-11-03 |
amwaterhouse | Use Jalview2XML to copy AlignmentPanel
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | return if image is null
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Update editMenuBar after alignment changed
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Set menu state in alignFrame
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Fire align change for case change
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | History is per viewport
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | selected states set in updateMenusFromViewport
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | Use system path separator char
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commit | commitdiff | tree |
| 2006-11-02 |
amwaterhouse | dasregistry is now dasregistry.org
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | Fix for feature name amended
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | shift I to inverse sequence selection
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | Append html
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | Update features
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | conservation lock
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commit | commitdiff | tree |
| 2006-10-30 |
amwaterhouse | deleteSequenceFeature
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Remove consensus annotation if out of memory
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | updatingConsensus, updatingConservation is static ...
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | PaintRefresher can calculate seqs added or removed
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Dont remove or add PaintRefresher registrations for...
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | -1 error
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Reset colour schemes and alignmentChanged moved to...
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | If sequence is null, dont add it
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | New padgaps works out number of gaps to insert, delete
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Rename old properties file before writing new
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commit | commitdiff | tree |
| 2006-10-27 |
amwaterhouse | Focus listener on Tabbed pane, gives keyboard focus...
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Only adds history item if size>0
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Returns number of columns deleted
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Remove system.out
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | void changeCase(ActionEvent e
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | set quality to null if removed
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | showConservation, quality, identity not used
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Dont readd the undo
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | check command.string[i] is not null
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Sequence length maybe less than end
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Error message changed
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Sequences may be hidden, not in this aligment
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Invert accelerators
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | sequence may be null if hidden or deleted
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Set alignFrame of gathered panels to be the source...
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | remove gaps size range
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | No need to reduce length if inserting more gaps at...
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Check if hiddenSequence has been deleted
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Known bugs fixed
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commit | commitdiff | tree |
| 2006-10-26 |
amwaterhouse | Dont scroll off width-1
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | We can delete sequence 0
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | Return if negative width, ie alignment deleted
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | Check hiddenSequence before placing in tmp
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | Get sequence in routine
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | viewport.hasHiddenColumns updated after undo/redo performed
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | EditCommand added to AlignFrame
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | Adjusts columnSelection correctly
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | Adjusts hiddenColumns correctly
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commit | commitdiff | tree |
| 2006-10-25 |
amwaterhouse | more accelerators
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Only send one call per sequence at the moment
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | ShowConservation, quality, identity not used
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Must set alignIndex before delete takes place
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Use EditCommand.Cut
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | HistoryItem replaced by CommandI
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | EditCommand implemented
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | must translate graphics back the same amountcvs diff...
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Change Case is undoable
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | SequenceIndex might be beyond old height
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Must catch image outOfMemoryError
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | changeCase, removeGaps moved to commands package
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | maxIdLength redundant, deleteCols, trimLeft, removeGaps...
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Uses RemoveGapsCommand
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Remove variables not used
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Remove unneccessary import
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Make everything final
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | New accelerators
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Commented out for compilation
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | setOrder is public
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Commands which can be done, or undone
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commit | commitdiff | tree |
| 2006-10-24 |
amwaterhouse | Its historycvs remove jalview/datamodel/HistoryItem...
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | Wait for response from server before next sequence
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | showqual, showcons never used
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | remove html and body from tooltip
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | new feature args
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | Can set description for new features
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | Faded anntotations when recalculating
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | set conserve and quality null if outofmemory
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | No longer a FeatureListener
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | parseDescriptionHTML
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | draw text after linkimage
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | Remove system.out
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commit | commitdiff | tree |
| 2006-10-18 |
amwaterhouse | Gerneral XML parse error
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commit | commitdiff | tree |
| 2006-10-12 |
amwaterhouse | showQuality may be updated during archive file load
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commit | commitdiff | tree |
| 2006-10-12 |
amwaterhouse | Convenient function findEndRes
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commit | commitdiff | tree |
| 2006-10-12 |
amwaterhouse | Add features from Popupmenu
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commit | commitdiff | tree |
| 2006-10-12 |
amwaterhouse | Overview may request index beyond alignment height
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commit | commitdiff | tree |
| 2006-10-12 |
amwaterhouse | Use i, not index if not representedSeqs
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commit | commitdiff | tree |
| 2006-10-12 |
amwaterhouse | If conservation is null, disable Blosum62 and conservation...
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commit | commitdiff | tree |
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