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JAL-3633 Remember system set proxy properties. Add options in Preferences for No...
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3002fastPaintWr...
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2019-03-05
gmungoc
JAL-3049 JAL-3032 tidy/i18n code, remove redundant...
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2019-03-05
gmungoc
JAL-3049 redo (part of) commit 92bc328
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2019-03-05
gmungoc
JAL-3054 small y-overlap of tooltip and cell leads...
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2019-03-05
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3049colourCellT...
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2019-03-05
gmungoc
JAL-3205 added a delta parameter to Matrix.equals()
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2019-03-04
gmungoc
Merge branch 'bug/JAL-3072scrollThread' into merge...
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2019-03-04
gmungoc
Merge remote-tracking branch 'origin/bug/JAL-3082selectRegex...
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2019-03-04
gmungoc
JAL-3206 avoid divide by zero when threshold is graphMin...
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2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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2019-03-04
gmungoc
Merge remote-tracking branch 'origin/tasks/JAL-3035_remove_d...
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2019-03-04
gmungoc
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
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2019-03-04
gmungoc
JAL-3205 worked examples in unit test for symmetric...
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2019-03-03
gmungoc
JAL-3205 one more unit test case
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2019-03-03
gmungoc
JAL-3205 faster calculation with symmetric score matrix
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2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
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2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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2019-03-01
gmungoc
JAL-3093 unit test adapts to actual number of annotation...
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2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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2019-03-01
gmungoc
Merge branch 'feature/JAL-1244stretchStatusMsg' into...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3139colocatedFeatures' into develop
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2019-03-01
gmungoc
JAL-3154 disable reorder columns before adding to viewport
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3154tableColumnDrag' into develop
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3161annotationTooltipRange' into...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3158selectionBroadcasts' into...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3164complementOverview' into...
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2019-03-01
gmungoc
Merge branch 'merge/JAL-3140' into develop
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2019-03-01
gmungoc
JAL-3140 update for change to SequenceI api
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2019-03-01
gmungoc
Merge branch 'feature/intervalStoreJ' into merge/JAL...
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2019-03-01
gmungoc
JAL-3140 reduced coupling to intervalstore.jar
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2019-02-28
gmungoc
JAL-3140 confine intervalstore imports to jalview.datamodel...
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2019-02-28
gmungoc
Merge branch 'bug/JAL-2420revealAllMenu' into develop
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2019-02-28
gmungoc
Merge branch 'bug/JAL-3166npeAllRowsHidden' into develop
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2019-02-28
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into...
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2019-02-28
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into merge...
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2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_backup...
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2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
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2019-02-26
gmungoc
JAL-3201 JAL-2386 don't pre-select 'apply to all groups'
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2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
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2019-02-25
gmungoc
JAL-3200 fast lookup of DSSP3 notation
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2019-02-24
gmungoc
JAL-3198 don't recalculate group conservation for Id...
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2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without duplicates...
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2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to position...
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2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
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2019-02-21
gmungoc
JAL-3187 handle no mapping / complement features without NPE
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2019-02-20
gmungoc
Merge branch 'feature/JAL-3143ensemblJSON' into feature...
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2019-02-20
gmungoc
JAL-3187 read peptide variant from CSQ:HGVSp if present...
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2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
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2019-02-18
gmungoc
JAL-3187 reset ViewStyle on Cancel in FeatureSettings
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2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
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2019-02-15
gmungoc
JAL-3010 getColumnClass() never return null
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2019-02-07
gmungoc
JAL-3140 updated to latest intervalstore.jar
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2019-02-04
gmungoc
JAL-3143 update unit test for ID -> id change
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2019-01-29
gmungoc
JAL-3143 format alleles array for feature description
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2019-01-25
gmungoc
JAL-3187 return a colour for linked features with transparency
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2019-01-25
gmungoc
JAL-3187 set initial state of checkbox from viewport
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2019-01-25
gmungoc
JAL-3187 don't compute variant features on peptide...
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2019-01-24
gmungoc
JAL-3018 Ensembl version updated to 9.0
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2019-01-23
gmungoc
JAL-3187 fix out by one feature on structure position
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2019-01-23
gmungoc
Merge branch 'develop' into feature/JAL-3187linkedFeatures
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2019-01-23
gmungoc
JAL-3063 correct handling of absent choice element...
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2019-01-22
gmungoc
JAL-3187 clunky sort by renderorder in findComplementFeature...
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2019-01-21
gmungoc
JAL-3187 also repaint complement on change in FeatureTypeSet...
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2019-01-21
gmungoc
JAL-3187 draw complement features on alignment / structure
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2019-01-21
gmungoc
JAL-3187 unit tests updated and errors caught
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2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
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2019-01-21
gmungoc
JAL-3187 repaint a 'following' complementary view on...
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2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on structure...
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2019-01-18
gmungoc
JAL-3187 basic first version for tooltips only (rendering...
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2019-01-18
gmungoc
JAL-3143 'id' not 'ID' attribute drives generation...
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2019-01-14
gmungoc
JAL-3186 remove Variable Colour from popup menu
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2019-01-14
gmungoc
JAL-3186 remove duplicate message keys
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2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
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2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
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2019-01-14
gmungoc
JAL-3125 tidy up
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2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
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2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
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2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
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2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testability
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2019-01-04
gmungoc
JAL-3181 simplified code and test
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2019-01-03
gmungoc
JAL-3181 order link menu items
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2019-01-03
gmungoc
JAL-1889 additional test for clover-added fields
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2019-01-03
gmungoc
JAL-1889 ignore 'synthetic' fields added for jacoco
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2018-12-21
gmungoc
JAL-1767 minimise local variable scope
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2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crosshair...
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2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
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2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
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2018-12-19
gmungoc
JAL-3032 ignore /site also on non-JS branches
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2018-12-10
gmungoc
JAL-1421 added type to List and Vector
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2018-12-10
gmungoc
JAL-3169 leave file browser open on Cancel in overwrite...
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2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
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2018-12-06
gmungoc
JAL-1854 Checkstyle updated to 8.12
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2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
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2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
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2018-11-29
gmungoc
JAL-3140 updated IntervalStore jar
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2018-11-29
gmungoc
JAL-3140 named tagged version of intervalstore.jar
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2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
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2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
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