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workaround for JAL-1395
2013-10-15 Jim Procterworkaround for JAL-1395
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2013-10-15 Jim ProcterMerge branch 'dev_from_2_8_1' into develop
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2013-10-15 Jim ProcterJAL-1159 Merging 2.8.1 patches and Anne Menards work...
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2013-10-14 Jim ProcterMerge branch 'develop' into dev_from_2_8_1
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2013-10-11 Jim ProcterMerge branch 'JAL-1292_regression' into Release_2_8_1_Branch
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2013-10-11 Jim ProcterJAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11 Jim ProcterMerge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11 Jim ProcterJAL-1164 scope bySequence analysis methods to start...
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2013-10-11 Jim ProcterJAL-1114 javadoc
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2013-10-11 Jim ProcterJAL-1114 promote start/end attributes to gettable fields...
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2013-10-11 Jim ProcterJAL-1114 API javadoc
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2013-10-11 Jim ProcterJAL-1164 only predict on currently selected sequences...
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2013-10-11 Jim ProcterJAL-1385 expose core view model methods in interface
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2013-10-11 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2_8_1_...
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2013-10-11 Jim ProcterJAL-1354 watch for exceptions when initialising (Security...
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2013-10-11 Jim ProcterJAL-1354 ensure resource bundles are copied into JalviewAppl...
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2013-10-08 Jim Procterreindexed Jmol jar with 'jar -i' to fix JAL-1389
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2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch_i18n' into Release_2_8_1_...
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2013-10-08 Jim Procterlocalisation for JAL-1384 and JAL-1388
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2013-10-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2013-10-08 Jim ProcterMerge branch 'JAL-643_JAL-1384' into Release_2_8_1_Branch
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2013-10-08 Jim ProcterJAL-1384 JAL-1388 revised popup menu documentation...
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2013-10-08 Jim ProcterJAL-1384 Create Group in selection popup menu
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2013-10-08 Jim Procterfix for JAL-1387
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2013-10-08 Jim ProcterJAL-1384 documentation and consistent ordering for...
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2013-10-08 Jim ProcterJAL-1384 group/ungroup sequences with command/ctrl...
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2013-10-07 Jim ProcterJAL-1385 refactor logic to AlignmentViewController
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2013-10-07 Jim ProcterJAL-1385 JAL-535 refactor sequence colour settings...
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2013-10-07 Jim ProcterJAL-1385 expose core view model methods in interface
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2013-10-07 Jim ProcterJAL-1385 Alignment view controller logic implementation...
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2013-10-05 Jim ProcterMerge branch 'JAL-1378_jb2.1cli' into Release_2_8_1_Branch
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2013-10-05 Jim ProcterJAL-1379 graceful degradation to legacy service when...
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2013-10-05 Jim ProcterJAL-1379 JAL-1378 exclusion list property to ignore...
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2013-10-05 Jim ProcterJAL-1378 hack to place 'Predictors' into Secondary...
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2013-10-05 Jim ProcterJAL-1364 use gapMap to map RNAalifold annotation onto...
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2013-10-05 Jim ProcterJAL-1379 JAL-1358 only enable/disable menu entries...
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2013-10-04 Jim ProcterJAL-1383 - disable startup of the Envision2 workflow...
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2013-10-04 Jim ProcterJAL-940 JAL-1378 EOL comment on JWS v1 services
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2013-10-04 Jim Procterupdate JABA client dependency in InstallAnywhere build
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2013-10-04 Jim ProcterMerge branch 'RNAalifold' into Release_2_8_1_Branch
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2013-10-04 Jim Procterfix for JAL-1380 and efficiency todo for JAL-1381
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2013-10-04 Jim ProcterJAL-1378 JWS-71 update to from-source build of JABA...
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2013-09-25 Jim ProcterJAL-1365 test that RNAAliFold service settings are...
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2013-09-25 Jim Procterformatting
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2013-09-25 Jim ProcterJAL-1365 unified GUI building for AACon and RNAAliFold...
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2013-09-25 Jim ProcterJAL-1365 use AlignAnalysisUIText class to provide metadata...
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2013-09-25 Jim ProcterJAL-1365 refactored core methods from RNAAliFold and...
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2013-09-25 Jim ProcterJAL-1365 new metadata class to describe instantaneous...
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2013-09-25 Jim ProcterJAL-1270 nominal jalview version string for projects...
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2013-09-25 Jim ProcterJAL-1270 Desktop.instance is null during headless jalview...
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2013-09-20 Jim Procterformatting
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2013-09-18 Jim ProcterJAL-1355 - fix compilation errors: typos and missing...
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2013-09-13 Jim Proctertweak - v is lowercase in Jalview
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2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into RNAalifold
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2013-09-03 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch
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2013-09-03 Jim ProcterJAL-1373 tweak precision calculation so alignments...
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2013-09-03 Jim ProcterJAL-920 compute a consensus for single sequence
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2013-09-02 Jim ProcterMerge branch 'JAL-1373_precision' into develop
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2013-09-02 Jim ProcterMerge branch 'JAL-1373_precision' into Release_2_8_1_Branch
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2013-09-02 Jim ProcterJAL-1373 JAL-520 wrap tooltips for columns in annotation...
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2013-09-02 Jim ProcterJAL-1373 generate percentages with appropriate precision
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2013-09-02 Jim ProcterJAL-1373 pass size of sequence set to consensus rendering...
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2013-09-02 Jim ProcterJAL-1358 monday morning commits :(
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2013-09-02 Jim ProcterJAL-1358 jabaws not jaba
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2013-09-02 Jim ProcterJAL-1358 update jabaws client for installanywhere
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2013-09-02 Jim ProcterJAL-1358 remove old v2 jaba min-client
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2013-08-27 Jim ProcterMerge branch 'JAL-1359_patch' into develop
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2013-08-27 Jim ProcterMerge branch 'JAL-1359_patch' into Release_2_8_1_Branch
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2013-08-27 Jim ProcterJAL-1359 simpler logic for deciding if all threads...
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2013-08-27 Jim ProcterMerge branch 'JAL-1332_regression' into develop
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2013-08-27 Jim ProcterMerge branch 'JAL-1332_regression' into Release_2_8_1_Branch
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2013-08-27 Jim ProcterJAL-1332 regression from 7ce72ca7fadf35a249427ecb836b22abb04...
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2013-08-27 Jim ProcterJAL-1332 - defer SSM provision to root provider for...
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2013-08-20 Jim ProcterMerge branch 'JAL-1353-bugdemo' into Release_2_8_1_Branch
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2013-08-20 Jim ProcterJAL-1353 test demonstrating the freeze with minimal...
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2013-08-14 Jim ProcterJAL-1354 i18n bundle for Spanish
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2013-08-14 Jim ProcterJAL-1354 replacement of bare strings in GUI dialogs...
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2013-07-12 Jim ProcterMerge branch 'JAL-1347' into develop
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2013-07-12 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_1_Branch
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2013-07-12 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_Branch
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2013-07-12 Jim ProcterJAL-1347 RNA Structure consensus follows the alignment...
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2013-07-12 Jim ProcterJAL-1347 flow control for display of profile data is...
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2013-07-11 Jim ProcterMerge branch 'JAL-1347' into develop
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2013-07-11 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_1_Branch
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2013-07-11 Jim ProcterMerge branch 'JAL-1347' into Release_2_8_Branch
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2013-07-11 Jim ProcterJAL-1347 identify and set rendering settings for consensus...
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2013-07-11 Jim ProcterJAL-1347 refactor logic for setting display flags for...
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2013-07-11 Jim ProcterJAL-1347 make it efficient to call getConsensus to...
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2013-07-09 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
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2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into develop
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2013-07-09 Jim ProcterMerge branch 'JAL-895/reopen' into Release_2_8_1_Branch
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2013-07-09 Jim ProcterJAL-895 - patch example files with correct Fe positions
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2013-07-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into develop_m2_8_1_2
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2013-07-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into develop
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2013-07-08 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_Branch
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2013-07-08 Jim Proctermake sure 'example alignment' can be found in documentation
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2013-07-07 Jim ProcterMerge branch 'develop' into develop_m2_8_1_2
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2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into develop
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2013-07-07 Jim ProcterMerge branch 'structures/JAL-1016' into Release_2_8_Branch
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2013-07-07 Jim ProcterJAL-1345 - set nSeconds arg for http://chemapps.stolaf...
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